Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP24_F_L10
(1122 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0916 - 32706039-32706332,32707483-32708103,32708450-327090... 37 0.025
03_02_0546 - 9381989-9383733,9385838-9386054 37 0.033
03_01_0093 - 745434-746057,746492-747112,747222-747791,747870-74... 37 0.033
02_01_0112 - 839048-839552,839638-839720,839828-839982,840078-84... 35 0.13
03_05_0877 + 28443481-28443538,28443641-28443911,28444028-284442... 34 0.24
11_01_0564 - 4447078-4448519,4449465-4449711 33 0.41
11_01_0563 + 4423609-4423846,4424671-4426132,4428949-4429364,443... 33 0.41
05_04_0052 - 17515344-17517353 33 0.54
05_03_0397 + 13488642-13488941,13489711-13489963,13490594-134906... 33 0.54
08_01_0654 - 5639419-5641449 30 2.9
>02_05_0916 -
32706039-32706332,32707483-32708103,32708450-32709070,
32709183-32709752,32709840-32709918,32710002-32710075,
32711336-32711398
Length = 773
Score = 37.1 bits (82), Expect = 0.025
Identities = 21/36 (58%), Positives = 23/36 (63%)
Frame = -1
Query: 414 RGXXQIEVTFDXDAXGIXXVSASREVQPXKEXXITI 307
RG QIEVTFD DA GI VSA ++ KE ITI
Sbjct: 512 RGMPQIEVTFDIDANGIVTVSA-KDKSTGKEQQITI 546
>03_02_0546 - 9381989-9383733,9385838-9386054
Length = 653
Score = 36.7 bits (81), Expect = 0.033
Identities = 21/38 (55%), Positives = 23/38 (60%)
Frame = -1
Query: 414 RGXXQIEVTFDXDAXGIXXVSASREVQPXKEXXITITN 301
RG QI VTFD DA GI VSA + K+ ITITN
Sbjct: 476 RGVPQINVTFDIDANGILNVSA-EDKTTGKKNKITITN 512
>03_01_0093 -
745434-746057,746492-747112,747222-747791,747870-747948,
748258-748331,748385-748387
Length = 656
Score = 36.7 bits (81), Expect = 0.033
Identities = 21/36 (58%), Positives = 23/36 (63%)
Frame = -1
Query: 414 RGXXQIEVTFDXDAXGIXXVSASREVQPXKEXXITI 307
RG QIEVTFD DA GI VSA ++ KE ITI
Sbjct: 492 RGMPQIEVTFDIDANGIVTVSA-KDKATGKEQQITI 526
>02_01_0112 -
839048-839552,839638-839720,839828-839982,840078-840557,
840855-841097,841189-841403,841489-841756,842477-842525
Length = 665
Score = 34.7 bits (76), Expect = 0.13
Identities = 20/38 (52%), Positives = 22/38 (57%)
Frame = -1
Query: 414 RGXXQIEVTFDXDAXGIXXVSASREVQPXKEXXITITN 301
RG QIEVTF+ DA GI V A + K ITITN
Sbjct: 498 RGTPQIEVTFEVDANGILNVKA-EDKGTGKSEKITITN 534
>03_05_0877 +
28443481-28443538,28443641-28443911,28444028-28444242,
28444329-28445057,28445143-28445297,28445384-28445965
Length = 669
Score = 33.9 bits (74), Expect = 0.24
Identities = 19/38 (50%), Positives = 23/38 (60%)
Frame = -1
Query: 414 RGXXQIEVTFDXDAXGIXXVSASREVQPXKEXXITITN 301
RG QIEVTF+ D GI V+AS + + ITITN
Sbjct: 504 RGVPQIEVTFEVDENGILHVTAS-DKAAGRSKSITITN 540
>11_01_0564 - 4447078-4448519,4449465-4449711
Length = 562
Score = 33.1 bits (72), Expect = 0.41
Identities = 18/33 (54%), Positives = 21/33 (63%)
Frame = -1
Query: 399 IEVTFDXDAXGIXXVSASREVQPXKEXXITITN 301
I+VTFD DA G+ VSA +V K ITITN
Sbjct: 500 IDVTFDIDANGVLNVSAEHKVTGQKN-SITITN 531
>11_01_0563 +
4423609-4423846,4424671-4426132,4428949-4429364,
4430555-4432052,4432199-4432217,4432469-4432675,
4432814-4433065
Length = 1363
Score = 33.1 bits (72), Expect = 0.41
Identities = 17/38 (44%), Positives = 24/38 (63%)
Frame = -1
Query: 414 RGXXQIEVTFDXDAXGIXXVSASREVQPXKEXXITITN 301
RG QI+VTF+ DA G+ VSA +++ + I ITN
Sbjct: 503 RGVPQIDVTFEFDANGVLHVSA-KDMGTGSKNNIAITN 539
>05_04_0052 - 17515344-17517353
Length = 669
Score = 32.7 bits (71), Expect = 0.54
Identities = 21/53 (39%), Positives = 26/53 (49%)
Frame = -1
Query: 414 RGXXQIEVTFDXDAXGIXXVSASREVQPXKEXXITITNWPXSSXXQERDXAYG 256
RG QIEV F+ DA GI VSA+ E ITI+ + +E D G
Sbjct: 506 RGAPQIEVAFEVDADGILSVSAADRATGRSE-RITISGDDRKTSREEIDRMLG 557
>05_03_0397 +
13488642-13488941,13489711-13489963,13490594-13490673,
13491251-13491393,13491512-13491610,13491785-13491974,
13492504-13492902,13492993-13493400
Length = 623
Score = 32.7 bits (71), Expect = 0.54
Identities = 20/37 (54%), Positives = 22/37 (59%)
Frame = -1
Query: 414 RGXXQIEVTFDXDAXGIXXVSASREVQPXKEXXITIT 304
RG QIEV FD DA GI VSA + K+ ITIT
Sbjct: 444 RGVPQIEVKFDIDANGILSVSAV-DKGTGKKQDITIT 479
>08_01_0654 - 5639419-5641449
Length = 676
Score = 30.3 bits (65), Expect = 2.9
Identities = 18/37 (48%), Positives = 22/37 (59%)
Frame = -1
Query: 414 RGXXQIEVTFDXDAXGIXXVSASREVQPXKEXXITIT 304
RG QIEVTF+ DA GI V A+ + E ITI+
Sbjct: 510 RGAPQIEVTFEVDANGILSVLAADKATGRSE-KITIS 545
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,637,766
Number of Sequences: 37544
Number of extensions: 144635
Number of successful extensions: 181
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3386386840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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