Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP24_F_L10
(1122 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z80223-1|CAB02319.1| 640|Caenorhabditis elegans Hypothetical pr... 40 0.003
M18540-1|AAA28078.1| 640|Caenorhabditis elegans protein ( C.ele... 39 0.007
Z83108-5|CAB05508.1| 645|Caenorhabditis elegans Hypothetical pr... 36 0.040
Z83108-4|CAB05507.1| 645|Caenorhabditis elegans Hypothetical pr... 36 0.040
U88315-3|AAB42371.1| 657|Caenorhabditis elegans Heat shock prot... 35 0.12
Z81467-1|CAB03871.1| 643|Caenorhabditis elegans Hypothetical pr... 34 0.21
M28528-1|AAA28076.1| 288|Caenorhabditis elegans protein ( C.ele... 33 0.49
AF000264-1|AAC71123.1| 657|Caenorhabditis elegans Heat shock pr... 33 0.49
U56965-1|AAB52671.1| 661|Caenorhabditis elegans Heat shock prot... 32 0.64
M26604-1|AAA28074.1| 661|Caenorhabditis elegans protein ( C. el... 32 0.64
>Z80223-1|CAB02319.1| 640|Caenorhabditis elegans Hypothetical
protein F26D10.3 protein.
Length = 640
Score = 39.9 bits (89), Expect = 0.003
Identities = 22/38 (57%), Positives = 25/38 (65%)
Frame = -1
Query: 414 RGXXQIEVTFDXDAXGIXXVSASREVQPXKEXXITITN 301
RG QIEVTFD DA GI VSA+ + K+ ITITN
Sbjct: 470 RGVPQIEVTFDIDANGILNVSAT-DKSTGKQNKITITN 506
>M18540-1|AAA28078.1| 640|Caenorhabditis elegans protein (
C.elegans heat shockprotein 70A gene, complete cds. ).
Length = 640
Score = 38.7 bits (86), Expect = 0.007
Identities = 22/38 (57%), Positives = 24/38 (63%)
Frame = -1
Query: 414 RGXXQIEVTFDXDAXGIXXVSASREVQPXKEXXITITN 301
RG QIEVTFD DA GI VSA+ + K ITITN
Sbjct: 470 RGVPQIEVTFDIDANGILNVSAT-DKSTGKAKQITITN 506
>Z83108-5|CAB05508.1| 645|Caenorhabditis elegans Hypothetical
protein F44E5.5 protein.
Length = 645
Score = 36.3 bits (80), Expect = 0.040
Identities = 21/38 (55%), Positives = 22/38 (57%)
Frame = -1
Query: 414 RGXXQIEVTFDXDAXGIXXVSASREVQPXKEXXITITN 301
RG QIEVTFD DA GI VSA + K ITI N
Sbjct: 470 RGVPQIEVTFDIDANGILNVSA-EDKSTGKSNRITIQN 506
>Z83108-4|CAB05507.1| 645|Caenorhabditis elegans Hypothetical
protein F44E5.4 protein.
Length = 645
Score = 36.3 bits (80), Expect = 0.040
Identities = 21/38 (55%), Positives = 22/38 (57%)
Frame = -1
Query: 414 RGXXQIEVTFDXDAXGIXXVSASREVQPXKEXXITITN 301
RG QIEVTFD DA GI VSA + K ITI N
Sbjct: 470 RGVPQIEVTFDIDANGILNVSA-EDKSTGKSNRITIQN 506
>U88315-3|AAB42371.1| 657|Caenorhabditis elegans Heat shock protein
protein 6 protein.
Length = 657
Score = 34.7 bits (76), Expect = 0.12
Identities = 20/36 (55%), Positives = 22/36 (61%)
Frame = -1
Query: 414 RGXXQIEVTFDXDAXGIXXVSASREVQPXKEXXITI 307
RG Q+EVTFD DA GI VSA R+ KE I I
Sbjct: 492 RGVPQVEVTFDIDANGIVNVSA-RDRGTGKEQQIVI 526
>Z81467-1|CAB03871.1| 643|Caenorhabditis elegans Hypothetical
protein C12C8.1 protein.
Length = 643
Score = 33.9 bits (74), Expect = 0.21
Identities = 18/38 (47%), Positives = 23/38 (60%)
Frame = -1
Query: 414 RGXXQIEVTFDXDAXGIXXVSASREVQPXKEXXITITN 301
RG Q++VTFD DA GI VSA+ + + ITI N
Sbjct: 470 RGVPQVDVTFDIDANGILNVSAA-DKSTGRSNRITIRN 506
>M28528-1|AAA28076.1| 288|Caenorhabditis elegans protein (
C.elegans heat shockprotein 4 gene, 3' end. ).
Length = 288
Score = 32.7 bits (71), Expect = 0.49
Identities = 19/38 (50%), Positives = 22/38 (57%)
Frame = -1
Query: 414 RGXXQIEVTFDXDAXGIXXVSASREVQPXKEXXITITN 301
RG QIEVTF+ D GI VSA + K +TITN
Sbjct: 125 RGVPQIEVTFEIDVNGILHVSAEDKGTGNKN-KLTITN 161
>AF000264-1|AAC71123.1| 657|Caenorhabditis elegans Heat shock
protein protein 4 protein.
Length = 657
Score = 32.7 bits (71), Expect = 0.49
Identities = 19/38 (50%), Positives = 22/38 (57%)
Frame = -1
Query: 414 RGXXQIEVTFDXDAXGIXXVSASREVQPXKEXXITITN 301
RG QIEVTF+ D GI VSA + K +TITN
Sbjct: 494 RGVPQIEVTFEIDVNGILHVSAEDKGTGNKN-KLTITN 530
>U56965-1|AAB52671.1| 661|Caenorhabditis elegans Heat shock protein
protein 3 protein.
Length = 661
Score = 32.3 bits (70), Expect = 0.64
Identities = 19/38 (50%), Positives = 22/38 (57%)
Frame = -1
Query: 414 RGXXQIEVTFDXDAXGIXXVSASREVQPXKEXXITITN 301
RG QIEVTF+ D GI V+A + K ITITN
Sbjct: 497 RGVPQIEVTFEIDVNGILHVTAEDKGTGNKN-KITITN 533
>M26604-1|AAA28074.1| 661|Caenorhabditis elegans protein ( C.
elegans BiP (hsp3)gene, complete cds. ).
Length = 661
Score = 32.3 bits (70), Expect = 0.64
Identities = 19/38 (50%), Positives = 22/38 (57%)
Frame = -1
Query: 414 RGXXQIEVTFDXDAXGIXXVSASREVQPXKEXXITITN 301
RG QIEVTF+ D GI V+A + K ITITN
Sbjct: 497 RGVPQIEVTFEIDVNGILHVTAEDKGTGNKN-KITITN 533
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,146,584
Number of Sequences: 27780
Number of extensions: 112750
Number of successful extensions: 384
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 384
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3025992820
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -