Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP24_F_L08
(912 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1827.02c |||cholinephosphate cytidylyltransferase |Schizosac... 34 0.032
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom... 33 0.043
SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomy... 32 0.13
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 31 0.30
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|... 29 1.2
SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual 28 1.6
SPCC1223.10c |eaf1||RNA polymerase II transcription elongation f... 28 2.1
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom... 28 2.1
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom... 27 3.7
SPCC613.07 |||zf-HIT|Schizosaccharomyces pombe|chr 3|||Manual 27 3.7
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 27 3.7
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 27 4.9
SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyce... 27 4.9
SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces p... 26 6.5
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy... 26 8.5
>SPCC1827.02c |||cholinephosphate cytidylyltransferase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 354
Score = 33.9 bits (74), Expect = 0.032
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = +2
Query: 551 KQKSSDEPNSKSNMEVDESDKNSRKRELXDDQETTPAK 664
K+ + + K N E+DE ++ +K E DD+E +P+K
Sbjct: 16 KEDNVERQTKKYNFEIDEPEEQEKKDEKEDDKEESPSK 53
>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 569
Score = 33.5 bits (73), Expect = 0.043
Identities = 25/127 (19%), Positives = 56/127 (44%), Gaps = 5/127 (3%)
Frame = +2
Query: 356 KYLEEEGHDPTTFKFELTTSDAKTPSKRTRRTESSLEQESDETPLMEDMIVQDDAGXXXX 535
K ++E + + K ++ D K ++ T +TE+ ++ + ++ D + D+
Sbjct: 424 KESKDENNKASLHK-DVEEKDTKITNEDTGKTETDVKAKETDSIEANDKDEKTDSKETED 482
Query: 536 XXQNIKQKSSD-EPNSKSNMEVDESDKNSRKRELXDDQETTPAK----KPCIHKEKNDED 700
+ + K +D + ++EVD+ ++ + +E D E T +K KP K +
Sbjct: 483 KVEETESKEADVKAKETDSIEVDDKEEKTDSKETADKVEQTDSKDTNEKPAKDDNKEANE 542
Query: 701 HKENTDA 721
E D+
Sbjct: 543 KAEKVDS 549
>SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 31.9 bits (69), Expect = 0.13
Identities = 20/110 (18%), Positives = 46/110 (41%)
Frame = +2
Query: 386 TTFKFELTTSDAKTPSKRTRRTESSLEQESDETPLMEDMIVQDDAGXXXXXXQNIKQKSS 565
TT + +++A+ S + E+ + + D+ ++ D+ + + +
Sbjct: 307 TTQQGTQNSANAEPSSSASVPAEAPETEAEQSIDVSSDIGLRSDSSKPNEAPTSSENIKA 366
Query: 566 DEPNSKSNMEVDESDKNSRKRELXDDQETTPAKKPCIHKEKNDEDHKENT 715
D+P + + E E D + E + E+TPA + E N+ K ++
Sbjct: 367 DQPENSTKQENPEEDMQIKDAEEHSNLESTPAAQQTSEVEANNHQEKPSS 416
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 30.7 bits (66), Expect = 0.30
Identities = 24/103 (23%), Positives = 41/103 (39%), Gaps = 3/103 (2%)
Frame = +2
Query: 365 EEEGHDPTTFKFELTTSDAKTPSKRTRRTESSLEQESDETPLMEDMIVQDDAGXXXXXXQ 544
EEE K E ++ + S +ESS + +E ++E + +
Sbjct: 149 EEEAVVKIEEKKESSSDSSSESSSSESESESSSSESEEEEEVVEKTEEKKEGSSESSSDS 208
Query: 545 NIKQKSSDE---PNSKSNMEVDESDKNSRKRELXDDQETTPAK 664
SS E +S S+ E + S ++ +KR+ E PAK
Sbjct: 209 ESSSDSSSESGDSDSSSDSESESSSEDEKKRKAEPASEERPAK 251
Score = 29.5 bits (63), Expect = 0.69
Identities = 21/102 (20%), Positives = 41/102 (40%), Gaps = 1/102 (0%)
Frame = +2
Query: 422 KTPSKRTRRTESSLEQESDETPLMEDMIVQDDAGXXXXXXQNIKQKS-SDEPNSKSNMEV 598
KT K+ +ESS ES+E I + ++ +S S+ +S+S E
Sbjct: 129 KTEEKKESSSESSSSSESEEEEEAVVKIEEKKESSSDSSSESSSSESESESSSSESEEEE 188
Query: 599 DESDKNSRKRELXDDQETTPAKKPCIHKEKNDEDHKENTDAD 724
+ +K K+E + + E D D +++++
Sbjct: 189 EVVEKTEEKKEGSSESSSDSESSSDSSSESGDSDSSSDSESE 230
>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
3|||Manual
Length = 828
Score = 28.7 bits (61), Expect = 1.2
Identities = 21/85 (24%), Positives = 33/85 (38%)
Frame = +2
Query: 401 ELTTSDAKTPSKRTRRTESSLEQESDETPLMEDMIVQDDAGXXXXXXQNIKQKSSDEPNS 580
E S PS TES + S E +++ D G + K S+ +
Sbjct: 620 EYKESSILAPSNPPFETESITD--STEIEGIKESFASTDTGLQNNSTATSENKRSESELT 677
Query: 581 KSNMEVDESDKNSRKRELXDDQETT 655
SN+ +E D+N E+ Q +T
Sbjct: 678 MSNVLSNEGDRNEEGSEINSSQPST 702
>SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 684
Score = 28.3 bits (60), Expect = 1.6
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Frame = +2
Query: 347 RLSKYLEEEGHDPTTFKFELTTSDAKTPSKRTRRTESSL-----EQESDETPLMEDMIVQ 511
++++ +E GH+ F+ + TS + S +R S L + DE P++ED
Sbjct: 614 KVNESIETNGHE--NFQKQALTSTGEQSSSNSRANPSKLFNISSDDSEDEVPIIEDTTAS 671
Query: 512 DD 517
D+
Sbjct: 672 DE 673
>SPCC1223.10c |eaf1||RNA polymerase II transcription elongation
factor SpEAF|Schizosaccharomyces pombe|chr 3|||Manual
Length = 251
Score = 27.9 bits (59), Expect = 2.1
Identities = 21/86 (24%), Positives = 39/86 (45%)
Frame = +2
Query: 413 SDAKTPSKRTRRTESSLEQESDETPLMEDMIVQDDAGXXXXXXQNIKQKSSDEPNSKSNM 592
S++K+ S+ T S+ +E E +D ++ + + K + + N + +M
Sbjct: 127 SESKSTSQSAVTTNSTRRKEK-ELEASKDGKIKPSSSNTRYPAISSKGPITTDTNDEPDM 185
Query: 593 EVDESDKNSRKRELXDDQETTPAKKP 670
EV E D +++ EL DQE P
Sbjct: 186 EVMELDDFAKELELGFDQEFNSIDDP 211
>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1125
Score = 27.9 bits (59), Expect = 2.1
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +2
Query: 491 MEDMIVQDDAGXXXXXXQNIKQKSSDEPNSKSNMEVDESD 610
+ D+ + D G +KQK++ K+NME DE+D
Sbjct: 193 LNDIHLFDTKGVDRRTQSELKQKANANNVEKANMEFDETD 232
>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1016
Score = 27.1 bits (57), Expect = 3.7
Identities = 23/72 (31%), Positives = 37/72 (51%)
Frame = +2
Query: 275 VIDLRAELEKRNLDKSGVRGVLIQRLSKYLEEEGHDPTTFKFELTTSDAKTPSKRTRRTE 454
+I L LEK L K+GVR ++ S +E+ +F TT AK+ S + +
Sbjct: 52 IIYLEERLEKLKLRKNGVRKSNSEKPSVGIEKN----PSFS---TTKSAKSFSSTSSNID 104
Query: 455 SSLEQESDETPL 490
S+L+ + +TPL
Sbjct: 105 SNLDLLNYDTPL 116
>SPCC613.07 |||zf-HIT|Schizosaccharomyces pombe|chr 3|||Manual
Length = 345
Score = 27.1 bits (57), Expect = 3.7
Identities = 30/111 (27%), Positives = 48/111 (43%), Gaps = 1/111 (0%)
Frame = +2
Query: 389 TFKFELTTSDAKTPSKRTRRTESSLEQESDETPLMEDMIVQDDAGXXXXXXQNIKQKSSD 568
+F FE+ T T + + TESS E S E DD+ + ++ SSD
Sbjct: 230 SFVFEVPTIHVFTSTTQVH-TESSYETSSSEQ--------SDDSSSSSSCISDSEESSSD 280
Query: 569 -EPNSKSNMEVDESDKNSRKRELXDDQETTPAKKPCIHKEKNDEDHKENTD 718
E N SN E NS + + + + K + ++DED ++N+D
Sbjct: 281 DELNELSN----EKKANSPTQNVDTSSKLSSVK----FQNEDDEDRRKNSD 323
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 27.1 bits (57), Expect = 3.7
Identities = 11/39 (28%), Positives = 22/39 (56%)
Frame = +2
Query: 551 KQKSSDEPNSKSNMEVDESDKNSRKRELXDDQETTPAKK 667
K+ S + S SN+ ++ +NSR+R DD+ +++
Sbjct: 1568 KRPRSSDSQSPSNLREEDERENSRRRARQDDRRDRDSRQ 1606
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 26.6 bits (56), Expect = 4.9
Identities = 18/104 (17%), Positives = 42/104 (40%)
Frame = +2
Query: 413 SDAKTPSKRTRRTESSLEQESDETPLMEDMIVQDDAGXXXXXXQNIKQKSSDEPNSKSNM 592
S++++ S+ + + SS ES+ + D ++ SS +S+S
Sbjct: 207 SESESSSEGSDSSSSSSSSESESSSEDNDSSSSSSDSESESSSED-SDSSSSSSDSESES 265
Query: 593 EVDESDKNSRKRELXDDQETTPAKKPCIHKEKNDEDHKENTDAD 724
+SD +S + DD + + ++ + ++D+D
Sbjct: 266 SSKDSDSSSNSSDSEDDSSSDSSDSESESSSEDSDSTSSSSDSD 309
Score = 26.6 bits (56), Expect = 4.9
Identities = 19/102 (18%), Positives = 42/102 (41%), Gaps = 1/102 (0%)
Frame = +2
Query: 413 SDAKTPSKRTRRTESSLEQESDETPLMEDMIVQD-DAGXXXXXXQNIKQKSSDEPNSKSN 589
S++++ S+ + + SS + ES+ + D D+ + + S +S S
Sbjct: 243 SESESSSEDSDSSSSSSDSESESSSKDSDSSSNSSDSEDDSSSDSSDSESESSSEDSDST 302
Query: 590 MEVDESDKNSRKRELXDDQETTPAKKPCIHKEKNDEDHKENT 715
+SD +S + + +TT + + N +E+T
Sbjct: 303 SSSSDSDSSSSSEDGNSNTDTTTSGEVSAQSSTNSTSSEEST 344
>SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 406
Score = 26.6 bits (56), Expect = 4.9
Identities = 14/51 (27%), Positives = 27/51 (52%)
Frame = +2
Query: 542 QNIKQKSSDEPNSKSNMEVDESDKNSRKRELXDDQETTPAKKPCIHKEKND 694
+ I ++ + S S+M+V ++ KRE+ +D + T A P + K+D
Sbjct: 149 EEIDRQVQEFEKSSSDMDVQI---HTHKREIEEDDDNTSADVPLLKHSKSD 196
>SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 608
Score = 26.2 bits (55), Expect = 6.5
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +2
Query: 575 NSKSNMEVDESDKNSRKRELXDDQETTPAKKPCIHKEKNDEDHKENTDAD 724
N+K E +NSRKR+L ++ K + + + E+ K+ DAD
Sbjct: 28 NAKKRKHSKEKPQNSRKRQLAEE-------KKSLFENSDSENEKDLIDAD 70
>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1019
Score = 25.8 bits (54), Expect = 8.5
Identities = 19/86 (22%), Positives = 32/86 (37%)
Frame = +2
Query: 365 EEEGHDPTTFKFELTTSDAKTPSKRTRRTESSLEQESDETPLMEDMIVQDDAGXXXXXXQ 544
++EG D E SDA + +E E S+E E + +++G
Sbjct: 937 DDEGDDSVEEVSEYEASDADPSDEEEEESEEYSEDASEEDGYSESEVEDEESG---EDWD 993
Query: 545 NIKQKSSDEPNSKSNMEVDESDKNSR 622
+++K+ E E S K R
Sbjct: 994 ELERKARQEDAKHDAFEERPSKKRHR 1019
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,689,838
Number of Sequences: 5004
Number of extensions: 50382
Number of successful extensions: 190
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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