Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP24_F_L06
(893 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 30 0.51
SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha... 29 0.89
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa... 29 1.2
SPCC1620.10 |cwf26||complexed with Cdc5 protein Cwf26 |Schizosac... 29 1.2
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar... 28 1.6
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 28 2.1
SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p... 28 2.1
SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protei... 28 2.1
SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr... 28 2.1
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo... 27 3.6
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce... 27 3.6
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc... 26 8.3
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 29.9 bits (64), Expect = 0.51
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +1
Query: 715 SSQFTQLSEEVQRKQSEYQKCLESYKQMRAKFEENYLKCPXS 840
++ LS ++R + EY+ L+ Y Q+RA+++ P S
Sbjct: 1048 TNNIDHLSTILERNRKEYKSLLDDYNQLRARYKNLQSNTPQS 1089
>SPBC609.03 |||WD repeat protein, human IQWD1
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 29.1 bits (62), Expect = 0.89
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 233 KFSFEGSQNSVGVIKKYVICVVFMFA 310
KFS +GS NS G++ +Y+ C F A
Sbjct: 251 KFSPDGSCNSQGILDRYITCCQFSAA 276
>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
Brl2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 680
Score = 28.7 bits (61), Expect = 1.2
Identities = 22/103 (21%), Positives = 43/103 (41%), Gaps = 5/103 (4%)
Frame = +1
Query: 514 KMDKCEELNGSVIAAAWRTMTEEWDNTSRLIKLNAEALESRALDRLTTLMTERRKARKMY 693
K+D+ L V+ T E N RL+ LN L+ L+ + KA ++
Sbjct: 388 KLDELANLETMVLEKKKAVATREAANKIRLVDLNDLELQKDLSTYLSKELASTEKAFRLV 447
Query: 694 QE-----DHTKISSQFTQLSEEVQRKQSEYQKCLESYKQMRAK 807
++ H+ T+ S E ++ + +Y ++S + A+
Sbjct: 448 KQQTVKSSHSHYQELITKFSVEKEKAEQKYFLTMKSTDSLHAE 490
>SPCC1620.10 |cwf26||complexed with Cdc5 protein Cwf26
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 305
Score = 28.7 bits (61), Expect = 1.2
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Frame = +1
Query: 604 IKLNAEALESRALDRLTTLMTERRKARKMYQEDHTKISSQFTQLSEEVQ-RKQSEYQKCL 780
++ + E + A R L+ R++A++ +E + Q Q VQ R+Q EY K L
Sbjct: 149 LRKSRETVYRDATGRRIDLVLARKEAKRKLKEKEEEARRQKEQQQGVVQVRQQKEYLKEL 208
Query: 781 ESYKQM-RAKFEEN 819
E K + A++E++
Sbjct: 209 ERQKTVPLARYEDD 222
>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 28.3 bits (60), Expect = 1.6
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = -1
Query: 182 DRLNKFKQKATSNSNVLHEREERAES*NDDK-LRNTRPLGNG 60
D L + +QKA NS VL + ++ NDDK +RN + + G
Sbjct: 531 DLLWERRQKAAMNSAVLRRQSSQSSGANDDKEVRNRKVVEKG 572
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 27.9 bits (59), Expect = 2.1
Identities = 35/127 (27%), Positives = 48/127 (37%), Gaps = 18/127 (14%)
Frame = +1
Query: 493 LRLRRGQKMDKCE--ELNGSVIAAAWRTMTEEWDNTS-------------RLIKLNAEAL 627
L R Q K E EL + +AAAWRT E+ N S + +L A+
Sbjct: 1357 LENERAQNQSKIEQLELKNTKLAAAWRTKYEQVVNKSLEKHNQIRQQLSQKTSELEAKVA 1416
Query: 628 ESRALDRLTTLMTERRKARKMYQEDHTKISSQFTQLSEEV---QRKQSEYQKCLESYKQM 798
E L+ + A E T +F EE+ QRK SE L + K+
Sbjct: 1417 ECHQLNEQLNKPSATPTATTQ-SEPSTVSLEEFNSTKEELSSTQRKLSEIMDILNTTKEE 1475
Query: 799 RAKFEEN 819
K +N
Sbjct: 1476 LEKVRQN 1482
Score = 26.2 bits (55), Expect = 6.3
Identities = 18/92 (19%), Positives = 40/92 (43%), Gaps = 4/92 (4%)
Frame = +1
Query: 577 EEWDNTSRLIKLNAEALESRALDRLTTLMTERRKARKM----YQEDHTKISSQFTQLSEE 744
+E + L K LE++ + T +ER + Q HT + SQ+
Sbjct: 882 QELNGVIELEKQRFSTLEAKFTQQKNTSYSEREALLESSLSDLQSKHTSLESQYNYSLRN 941
Query: 745 VQRKQSEYQKCLESYKQMRAKFEENYLKCPXS 840
+++ Q+ + E ++++ +++E L+ S
Sbjct: 942 IEQLQAASKLAEEMVERVKTEYDEYRLQTSES 973
>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 27.9 bits (59), Expect = 2.1
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 4/68 (5%)
Frame = +1
Query: 652 TTLMTERRKARKMYQEDHTKISSQFTQLSEEVQRKQSEYQKCLESYKQMRAKFEE----N 819
T LMT+ K T + + + E KQS+Y + L++YK+ K E N
Sbjct: 152 TRLMTQTSLYAKSAHSTKTVVDALYKSYLE----KQSDYSELLDNYKKQLNKASESCKGN 207
Query: 820 YLKCPXSR 843
Y C SR
Sbjct: 208 YQACIESR 215
>SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protein
Mcp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 327
Score = 27.9 bits (59), Expect = 2.1
Identities = 20/90 (22%), Positives = 47/90 (52%), Gaps = 6/90 (6%)
Frame = +1
Query: 580 EWDNTSRLIKLNAEALESRALDRLTTLMTER------RKARKMYQEDHTKISSQFTQLSE 741
E D+T R +++ E+LES+ ++ L E+ R+ ++ ++++ + + L E
Sbjct: 69 ERDSTQRTLQI--ESLESKIGEQERDLNNEKLASETLREKTQLLEKENGALKVENGYLYE 126
Query: 742 EVQRKQSEYQKCLESYKQMRAKFEENYLKC 831
+ ++ + E + ++KFEE+ L+C
Sbjct: 127 KSRKLEEEMAHLKKKCNVYKSKFEESSLRC 156
>SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 501
Score = 27.9 bits (59), Expect = 2.1
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +1
Query: 724 FTQLSEEVQRKQSEYQKCLESYKQMRAKFEEN 819
F LS ++Q+ + E K E + RAK+EE+
Sbjct: 150 FDALSTKIQKAKKEESKLEEDLRNARAKYEES 181
>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 27.1 bits (57), Expect = 3.6
Identities = 21/89 (23%), Positives = 37/89 (41%)
Frame = +1
Query: 607 KLNAEALESRALDRLTTLMTERRKARKMYQEDHTKISSQFTQLSEEVQRKQSEYQKCLES 786
K A +LE R + T + E M + + + +LSE ++ Q +Y+
Sbjct: 332 KRRARSLEERMSKEMLTKLGESNVDDGMAASRYDTVKREKERLSEHLKSLQEQYEHIQSV 391
Query: 787 YKQMRAKFEENYLKCPXSRGGRKLDETRD 873
YK + E+Y+ R G K+ E +
Sbjct: 392 YKNVLLD-RESYI----MRLGNKISENNE 415
>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 960
Score = 27.1 bits (57), Expect = 3.6
Identities = 8/27 (29%), Positives = 18/27 (66%)
Frame = +1
Query: 520 DKCEELNGSVIAAAWRTMTEEWDNTSR 600
+ ++L SVI ++W T+ +W++ S+
Sbjct: 447 EDAKQLKKSVIGSSWTTVNNDWNSVSK 473
>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1576
Score = 25.8 bits (54), Expect = 8.3
Identities = 28/107 (26%), Positives = 48/107 (44%), Gaps = 3/107 (2%)
Frame = +1
Query: 514 KMDKCEELNGSVIAAAWRTMTEEWDNT-SRLIKLNAEALESRALDRL-TTLMTERRKARK 687
K+D C EL S + +N + I+ + L+++A D L ++ E +
Sbjct: 62 KLDLCIELGRSYPYVKPVIKLQNGENVLNSQIRFLLDKLDTKAKDLLGEEMIFELASIVQ 121
Query: 688 MYQED-HTKISSQFTQLSEEVQRKQSEYQKCLESYKQMRAKFEENYL 825
Y D + +SSQF L EE + ++ E Q+R K E++ L
Sbjct: 122 DYLNDWQSDLSSQFASLEEERAVQLKHDRERAEVDLQLRLKREKDAL 168
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,271,180
Number of Sequences: 5004
Number of extensions: 63639
Number of successful extensions: 211
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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