Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP24_F_L06
(893 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0012 - 7355493-7355645,7356309-7356370,7356885-7356972,735... 32 0.71
11_06_0496 - 24325587-24326143,24326658-24327495,24327612-24327764 31 0.94
04_04_1215 - 31803261-31804847,31804927-31805052,31806502-31806879 30 2.2
02_05_1293 - 35520733-35520963,35521696-35521878,35522040-355222... 30 2.2
02_05_0484 - 29401195-29401404,29401572-29401755,29401866-294039... 30 2.2
03_06_0033 - 31186076-31186189,31186274-31186396,31186524-311867... 30 2.9
02_04_0063 - 19372222-19372296,19373474-19373554,19373698-193738... 29 5.0
10_06_0141 - 11151344-11151531,11151926-11152275,11153119-111532... 29 6.6
05_05_0348 + 24271764-24271898,24273055-24273144,24273205-242733... 29 6.6
05_07_0079 - 27539389-27539892,27540059-27540343,27540453-275405... 28 8.7
01_06_1142 + 34856497-34856698,34857852-34858402 28 8.7
>05_03_0012 -
7355493-7355645,7356309-7356370,7356885-7356972,
7357677-7357780,7357931-7358010,7359127-7359183,
7359924-7360036
Length = 218
Score = 31.9 bits (69), Expect = 0.71
Identities = 36/149 (24%), Positives = 65/149 (43%), Gaps = 20/149 (13%)
Frame = +1
Query: 493 LRLRRGQKMDKCEELNGS----VIAAAWRTM--TEEWD------NTSRLIKL-NAEALES 633
LRL +GQ MD E N + V+ W + T D + S+L+++ E +
Sbjct: 70 LRLNKGQTMDDISEGNKTNNIDVVYTPWYNLKKTPSMDVGQVGFHNSKLVRIVKVEKRIN 129
Query: 634 RALDRLTTLMTER-------RKARKMYQEDHTKISSQFTQLSEEVQRKQSEYQKCLESYK 792
++RL ER R+A ++ K+ + + EE++R + E Q + SYK
Sbjct: 130 EIVNRLNKTKVERKPDLKAEREAVSAAEKAERKVQLRDKKRREEMERVEKEKQAEIRSYK 189
Query: 793 QMRAKFEENYLKCPXSRGGRKLDETRDXY 879
+ + E+ + G + L+E D +
Sbjct: 190 NLMVQ-EKMTSNKQVASGSKTLEELEDDF 217
>11_06_0496 - 24325587-24326143,24326658-24327495,24327612-24327764
Length = 515
Score = 31.5 bits (68), Expect = 0.94
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +1
Query: 262 CWCDKKICDLCCVYVCNVWFSVDVGGSRW 348
C C + C+LC VCN F DV RW
Sbjct: 183 CCCRRGFCNLCMCVVCN-GFDFDVNTCRW 210
>04_04_1215 - 31803261-31804847,31804927-31805052,31806502-31806879
Length = 696
Score = 30.3 bits (65), Expect = 2.2
Identities = 28/102 (27%), Positives = 51/102 (50%), Gaps = 1/102 (0%)
Frame = +1
Query: 511 QKMDKCEELNGSVIAAAWRTMTEEWDNTSRLIKLNAEALESRALDRLTTLMTERRKARKM 690
+ ++ E + +IA+ + E+ D T + L E ++R DR++ L TERR A+K
Sbjct: 192 ESLEGMEAHDAYLIASQLNLLNEQQDATY-VANLQMELQQAR--DRVSELETERRAAKK- 247
Query: 691 YQEDHTKISSQFTQLSEEVQRKQS-EYQKCLESYKQMRAKFE 813
K+ F +L+EE +S E++K + M+A +
Sbjct: 248 ------KLDHLFKKLAEEKAAWRSREHEKVRAILEDMKADLD 283
>02_05_1293 -
35520733-35520963,35521696-35521878,35522040-35522255,
35522936-35523022,35523125-35523331,35523426-35523650,
35523743-35523798,35524009-35524115,35524443-35525470
Length = 779
Score = 30.3 bits (65), Expect = 2.2
Identities = 10/33 (30%), Positives = 22/33 (66%)
Frame = +1
Query: 661 MTERRKARKMYQEDHTKISSQFTQLSEEVQRKQ 759
M + R+A K Y+E++ ++ F +L EE++ ++
Sbjct: 290 MKKERRALKSYEEENNDLAGSFRELREEIKNRE 322
>02_05_0484 -
29401195-29401404,29401572-29401755,29401866-29403973,
29404320-29404403,29404507-29404777,29404864-29405117,
29405513-29405722,29406357-29406503
Length = 1155
Score = 30.3 bits (65), Expect = 2.2
Identities = 15/78 (19%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Frame = +1
Query: 595 SRLIKLNAEALESRALDRLTTLMTERRKARKMYQE--DHTKISSQFTQLSEEVQRKQSEY 768
+ + KL E+L++ + ++ E+ + +E +H +++Q + +E + + +
Sbjct: 435 AEMYKLELESLKATVVAEKEKILQEQNNLKLTEEERQEHIMLTAQLKKEIDEYRMRSNSL 494
Query: 769 QKCLESYKQMRAKFEENY 822
+ E ++ R KFEE +
Sbjct: 495 SEETEDLRKQRQKFEEEW 512
>03_06_0033 -
31186076-31186189,31186274-31186396,31186524-31186718,
31186805-31186930,31187024-31187186,31187270-31187405,
31187557-31187916,31188026-31188124,31188222-31188489
Length = 527
Score = 29.9 bits (64), Expect = 2.9
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +2
Query: 413 AKAHGSYEEKPPGKDEKRQRICSGVKCCGCAGG 511
A A ++ PPGK E+ + +CC +GG
Sbjct: 150 ASAEACQDDDPPGKAEESNAAAAADECCSSSGG 182
>02_04_0063 -
19372222-19372296,19373474-19373554,19373698-19373808,
19373901-19374158
Length = 174
Score = 29.1 bits (62), Expect = 5.0
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +1
Query: 709 KISSQFTQLSEEVQRKQSEYQKCLESYKQ 795
K++ Q L + +K+ EY+ CLE+Y +
Sbjct: 108 KVNRQLKPLGKNCLKKEKEYKACLEAYNE 136
>10_06_0141 -
11151344-11151531,11151926-11152275,11153119-11153274,
11153505-11153674,11155431-11155589,11157139-11157447,
11157550-11157750
Length = 510
Score = 28.7 bits (61), Expect = 6.6
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +1
Query: 511 QKMDKCEELNGSVIAAAWRTMTEEWDNTSRLIKLNAEALESRALDRL 651
Q M C E G I A RT W+ T +L +++ + + R D L
Sbjct: 79 QNMYLCAEQGGGTILVANRTSASGWE-TFKLWRIDEDTFDLRVFDNL 124
>05_05_0348 + 24271764-24271898,24273055-24273144,24273205-24273303,
24273725-24273826,24273912-24274088,24274193-24274398,
24274491-24274575,24274641-24274798,24274873-24274948,
24275117-24275245,24275313-24275457,24275561-24275691,
24276183-24276335,24276447-24276636,24277006-24277139,
24277248-24277406,24277659-24277964,24278040-24278216,
24278446-24278529,24278592-24278822,24278913-24279002,
24279090-24279211,24279293-24279448,24279477-24279635,
24279705-24279765,24280004-24280138,24280384-24280471,
24280548-24280620,24280883-24280994,24281691-24281711
Length = 1327
Score = 28.7 bits (61), Expect = 6.6
Identities = 12/54 (22%), Positives = 27/54 (50%)
Frame = +1
Query: 643 DRLTTLMTERRKARKMYQEDHTKISSQFTQLSEEVQRKQSEYQKCLESYKQMRA 804
+++ ++ E KA QED+ K +E+ + + EY K ++ ++R+
Sbjct: 964 EKMMSIFKEIEKAAFTVQEDYKKTQEMMDNHKDELDKTKVEYNKLKKAMDELRS 1017
>05_07_0079 -
27539389-27539892,27540059-27540343,27540453-27540550,
27540951-27541042,27541155-27541259,27541360-27541567,
27542469-27542472,27542742-27542765,27545025-27546266
Length = 853
Score = 28.3 bits (60), Expect = 8.7
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Frame = +1
Query: 493 LRLRRGQKMD-----KCEELNGSVIAAAWRTMTEEWDNTSRLIKLNAEALESRALDRLTT 657
LRLR G++ D + E+ GSV+ R + W S L K +AEA ++ + L
Sbjct: 783 LRLRYGERSDGLVTRRDAEVPGSVVVRPERRLDHAWMVHSTLRKDHAEADATQMCEALMA 842
Query: 658 LMTE 669
++ E
Sbjct: 843 MLVE 846
>01_06_1142 + 34856497-34856698,34857852-34858402
Length = 250
Score = 28.3 bits (60), Expect = 8.7
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -1
Query: 173 NKFKQKATSNSNVLHEREERAES*NDDKLRNTRPLGNGVRL 51
+K KQ A N+N E E ES D K ++ RPL + +
Sbjct: 148 SKRKQAALPNNNAESEAEADEESPTDKKPKSDRPLHQNIAM 188
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,487,899
Number of Sequences: 37544
Number of extensions: 452276
Number of successful extensions: 1333
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1286
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1333
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -