Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_L05
         (888 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    31   0.012
AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein p...    31   0.012
AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein p...    31   0.012
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    24   1.8  
AJ850289-1|CAH64509.1|  533|Tribolium castaneum putative esteras...    23   2.4  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    23   3.2  
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       23   3.2  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           23   3.2  
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    23   4.2  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          22   7.4  

>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 31.1 bits (67), Expect = 0.012
 Identities = 14/31 (45%), Positives = 22/31 (70%)
 Frame = -1

Query: 549 LHSDSPRNRSYKCSGNNCSNLVLVSCLATGR 457
           L S +P +RS  C G+N S+++ ++CL TGR
Sbjct: 228 LESPNPASRS-SCLGSNTSSMLSLNCLNTGR 257


>AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 31.1 bits (67), Expect = 0.012
 Identities = 14/31 (45%), Positives = 22/31 (70%)
 Frame = -1

Query: 549 LHSDSPRNRSYKCSGNNCSNLVLVSCLATGR 457
           L S +P +RS  C G+N S+++ ++CL TGR
Sbjct: 17  LESPNPASRS-SCLGSNTSSMLSLNCLNTGR 46


>AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 31.1 bits (67), Expect = 0.012
 Identities = 14/31 (45%), Positives = 22/31 (70%)
 Frame = -1

Query: 549 LHSDSPRNRSYKCSGNNCSNLVLVSCLATGR 457
           L S +P +RS  C G+N S+++ ++CL TGR
Sbjct: 17  LESPNPASRS-SCLGSNTSSMLSLNCLNTGR 46


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -1

Query: 582 PRSHPSARTLRLHSDSPRNRSYKCSGN 502
           P +  S  T+ +  +SP+ +SY+ +GN
Sbjct: 227 PSTSASPPTVNIKKESPQMQSYRPTGN 253


>AJ850289-1|CAH64509.1|  533|Tribolium castaneum putative esterase
           protein.
          Length = 533

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +3

Query: 510 CICKNGFVDCRSGAEECGQMDDCAVVMPREGC 605
           CI ++  +    G+E+C  ++     +P+EGC
Sbjct: 66  CISRHPVLKSLIGSEDCLTLNVYTRDLPKEGC 97


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -2

Query: 458 GLALVRTRNADPFNNSGRSVYRAVGDDSGE 369
           G    +T+NA P NN+ +   R   D  GE
Sbjct: 315 GKVRAKTQNATPANNNDKRKSRGEVDGLGE 344


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 9/26 (34%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
 Frame = +3

Query: 489 DWSSCFRCICKNGFVD--CRSGAEEC 560
           D  + F+CICK G+    C    ++C
Sbjct: 85  DKINAFQCICKEGWEGALCNINTDDC 110


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -2

Query: 458 GLALVRTRNADPFNNSGRSVYRAVGDDSGE 369
           G    +T+NA P NN+ +   R   D  GE
Sbjct: 315 GKVRAKTQNATPANNNDKRKSRGEVDGLGE 344


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +2

Query: 107 PSPRTDPDRSERHRIYTDWHPSNDSVFPTE 196
           PSP +D   +   R+Y + + + D   PTE
Sbjct: 410 PSPGSDQRSTPSPRVYGNVNENQDCSTPTE 439


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +2

Query: 155 TDWHPSNDSVFP 190
           T+WHPS+ S  P
Sbjct: 573 TNWHPSDKSAKP 584


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,551
Number of Sequences: 336
Number of extensions: 4808
Number of successful extensions: 15
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24617054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)