Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP24_F_L05
(888 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1292 - 25558643-25559376,25559989-25560097,25560578-255606... 31 1.6
04_04_0531 - 26048558-26049082 31 1.6
02_04_0621 - 24502383-24502476,24502532-24504015,24504125-245041... 31 1.6
12_02_0701 + 22271550-22271652,22272310-22272791,22272823-22272927 30 2.1
09_03_0198 - 13419630-13419806 30 2.8
09_04_0728 - 19771975-19772093,19772131-19772224,19772322-197725... 29 3.7
03_05_0346 + 23335753-23335854,23336268-23336473,23336530-233367... 29 4.9
08_02_1420 + 26942777-26942905,26944415-26944511,26944596-269449... 29 6.5
04_04_0262 - 24024451-24025080,24025421-24026320 29 6.5
09_04_0479 - 17948043-17949037,17949554-17949715,17949809-179502... 28 8.6
08_01_0131 + 1050028-1050459,1051599-1051701,1052338-1052393,105... 28 8.6
04_04_1535 + 34205426-34205593,34205697-34206869 28 8.6
02_04_0043 + 19185969-19186036,19186205-19187342 28 8.6
01_06_0809 - 32137202-32138128,32138247-32138631,32139503-321396... 28 8.6
>07_03_1292 -
25558643-25559376,25559989-25560097,25560578-25560676,
25560797-25560893,25560973-25561027,25561072-25561187,
25561445-25561562,25562369-25562684
Length = 547
Score = 30.7 bits (66), Expect = 1.6
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +3
Query: 81 ASLHGRPCAHLHAPTPTDRNDIAYTLTGIPQTIPFSRPKSNSMVPKFR 224
ASL+ R H H P D+ ++ +PQT+ RP+ ++P+FR
Sbjct: 493 ASLNVRQTVHHH---PLDQLGASFAPFNVPQTVYRPRPEGGYVMPQFR 537
>04_04_0531 - 26048558-26049082
Length = 174
Score = 30.7 bits (66), Expect = 1.6
Identities = 16/31 (51%), Positives = 18/31 (58%)
Frame = -3
Query: 373 ASSRRHAAYAVRHGARMFASTRGAGTRCSAS 281
A S R AA +H RMFA +RGA RC S
Sbjct: 2 AGSARSAA--AKHAYRMFAPSRGAAARCPGS 30
>02_04_0621 -
24502383-24502476,24502532-24504015,24504125-24504177,
24504871-24504984,24505068-24505202,24505960-24506055,
24506692-24506827
Length = 703
Score = 30.7 bits (66), Expect = 1.6
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Frame = +3
Query: 90 HGRPCAHLHAPTPTDRNDIAYTLTGIPQTIPF-----SRPKSNSMVPKFRKHSMHVLRSC 254
H H+H P +++ GI + F R +NSM+ K RK SM +++ C
Sbjct: 135 HDYLTVHVHTPI----TQVSFEAVGISRNTEFFADILQRLGANSMIKKHRKESMRMMKVC 190
Query: 255 G 257
G
Sbjct: 191 G 191
>12_02_0701 + 22271550-22271652,22272310-22272791,22272823-22272927
Length = 229
Score = 30.3 bits (65), Expect = 2.1
Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Frame = -2
Query: 446 VRTRNADPFNNSGRSVYRAVGDDSGEQ*ETCGVCGAARCPHVRVYSRRRH-PLLRLPCIT 270
+R+R + P + A G + E+ E G GAA R RRRH P +RL
Sbjct: 48 IRSRLSSPPTDPAADAATAAGSTARERRE--GAEGAATAGSARNCRRRRHHPRIRLRPPP 105
Query: 269 PSRHATRAQHVHG 231
RH R + + G
Sbjct: 106 TRRHCEREREMRG 118
>09_03_0198 - 13419630-13419806
Length = 58
Score = 29.9 bits (64), Expect = 2.8
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = -2
Query: 455 LALVRTRNADPFNNSGRSVYRAVGDDSGEQ*ETCGVCGAA 336
LA +R ADP +S + V +G DSG T G+ G+A
Sbjct: 5 LATPSSRGADPPPSSTKGVTTTLGSDSGSDGATLGMGGSA 44
>09_04_0728 -
19771975-19772093,19772131-19772224,19772322-19772507,
19772596-19772767,19772854-19772983,19773060-19773136,
19774109-19774194,19774508-19774585,19775916-19776045,
19776379-19776423,19776508-19776618,19776801-19777057,
19777153-19777302,19777899-19778008,19778426-19778546
Length = 621
Score = 29.5 bits (63), Expect = 3.7
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = +3
Query: 156 LTGIPQTIPFSRPKSNSMVPKFRKHSMHVLRSCGV-ARGCDAREAEQRVPAPRVDANM 326
L G P T F + + KHS+H+ R V R A+++EQ + + V +M
Sbjct: 215 LLGYPVTYLFCNESAETATQNLSKHSLHIYRIYAVRCRQSAAKQSEQELMSFSVPCDM 272
>03_05_0346 +
23335753-23335854,23336268-23336473,23336530-23336705,
23336832-23337064,23337546-23337963,23338045-23338262,
23338905-23339168
Length = 538
Score = 29.1 bits (62), Expect = 4.9
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = +3
Query: 165 IPQTIPFSRPKSNSMVPKFRKHSMHVLRSCGVARGCDAREAEQ 293
I +T+ PK N V K KH + CG DA + E+
Sbjct: 48 ISRTVELESPKGNVYVVKVSKHMNKTVLQCGWEAFVDAHQIEE 90
>08_02_1420 +
26942777-26942905,26944415-26944511,26944596-26944962,
26945286-26945793
Length = 366
Score = 28.7 bits (61), Expect = 6.5
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Frame = +3
Query: 72 DARASLHGRPCAH----LHAPTPTDRNDIAYTLTGIPQTIPFSRPKSNSMVPKFRKHSMH 239
D+ + RP AH +H PTP + +++ L +P + +R + + SMH
Sbjct: 179 DSSSQQRTRPYAHHRPLVHRPTPRNGSNMVTPLGSVPAVMAETRGHGHGARGHMYQQSMH 238
Query: 240 VLRS 251
L+S
Sbjct: 239 SLQS 242
>04_04_0262 - 24024451-24025080,24025421-24026320
Length = 509
Score = 28.7 bits (61), Expect = 6.5
Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 4/92 (4%)
Frame = -2
Query: 806 LITHSSQXRAIVMSVP----LLLRSITRRVTFRPGYRDDAGFASEHFPIIVPLGV*RVLG 639
L+ SS+ RA S+P L L +V P +R A A+ H ++ L + V
Sbjct: 25 LLAPSSKQRAASPSLPRPRGLPLIGNLHQVGALP-HRSLAALAARHAAPLMLLRLGSV-P 82
Query: 638 TIIPATFAFSAATLARHNDRAVIHLPALFGST 543
T++ +T A +A L R NDRA+ PAL+ +T
Sbjct: 83 TLVVST-ADAARALFRDNDRALSGRPALYAAT 113
>09_04_0479 -
17948043-17949037,17949554-17949715,17949809-17950262,
17952895-17953326
Length = 680
Score = 28.3 bits (60), Expect = 8.6
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Frame = +3
Query: 504 FRCICKNGFVDCRSGAEECGQMDDCA--VVMPREGCCTKCKG 623
+RC C NG+ + C +D+C P +G CT G
Sbjct: 276 YRCKCSNGYEGNPYIKDGCKDIDECLNNATYPCKGICTNTLG 317
>08_01_0131 +
1050028-1050459,1051599-1051701,1052338-1052393,
1052517-1052693,1052820-1052933,1053057-1053386
Length = 403
Score = 28.3 bits (60), Expect = 8.6
Identities = 17/49 (34%), Positives = 21/49 (42%)
Frame = +1
Query: 559 AGRWMTARSLCLARVAALNAKVAGIMVPSTRHTPSGTMMGKCSDAKPAS 705
AG + L L AA A VA P H SG +MG + P+S
Sbjct: 20 AGGRRSPLELSLLLTAAAGAAVAAAATPRDAHAASGGVMGGRRSSSPSS 68
>04_04_1535 + 34205426-34205593,34205697-34206869
Length = 446
Score = 28.3 bits (60), Expect = 8.6
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = -2
Query: 650 RVLGTIIPATFAFSAATLARHNDRAVIHLPALFGSTPTVHETVLTNAAETTAPI 489
R +GT+ P F + L +N+ ++P FGST + V N + T PI
Sbjct: 215 RFVGTVPPPVFDLTVVALFLNNNGFYGNIPDNFGSTTAEYLVVANN--QFTGPI 266
>02_04_0043 + 19185969-19186036,19186205-19187342
Length = 401
Score = 28.3 bits (60), Expect = 8.6
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +3
Query: 540 RSGAEECGQMDDCAVVMPREGCCTKCKGC 626
R CG+ D C +++P C C+GC
Sbjct: 351 RRACRACGEADACVLLLPCRHLCL-CRGC 378
>01_06_0809 -
32137202-32138128,32138247-32138631,32139503-32139607,
32139737-32139770,32139856-32140098,32140187-32140247
Length = 584
Score = 28.3 bits (60), Expect = 8.6
Identities = 20/75 (26%), Positives = 27/75 (36%), Gaps = 2/75 (2%)
Frame = +3
Query: 558 CGQMDDCAVVMPREGCCTKCKGCWYNGTEHASHTEWNDDGKVFRCE-AGVITISRPE-CY 731
CG DCA V P C + + S+ + N K C+ G T+S +
Sbjct: 44 CGHGADCAPVTPSGSCYSPNNVAAHCSYAANSYFQRNSQAKGATCDFGGAATLSSTDPSS 103
Query: 732 APCDRPKQQRHTHNN 776
C P R H N
Sbjct: 104 GTCKYPATARDKHRN 118
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,022,634
Number of Sequences: 37544
Number of extensions: 609819
Number of successful extensions: 2077
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1971
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2077
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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