Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP24_F_L05
(888 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF487333-1|AAL93262.1| 80|Apis mellifera integrin betaPS protein. 25 0.70
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 23 2.8
AJ849455-1|CAH60991.1| 366|Apis mellifera twist protein protein. 23 2.8
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat... 23 3.7
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 22 8.6
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 22 8.6
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 22 8.6
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 22 8.6
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 22 8.6
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 22 8.6
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 22 8.6
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 22 8.6
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 22 8.6
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 22 8.6
AY331183-1|AAP94623.1| 953|Apis mellifera NMDA-type glutamate r... 22 8.6
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 22 8.6
>AF487333-1|AAL93262.1| 80|Apis mellifera integrin betaPS protein.
Length = 80
Score = 25.4 bits (53), Expect = 0.70
Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = -3
Query: 691 HLNTFPSSFHSVCDACSVPL-YQQPLHLVQQPSRGITTAQ-SSICPHSSAP 545
+++T P S CD C+ P Y+ + L Q S + + +S+ + AP
Sbjct: 8 YVSTMPKSLKEPCDGCAAPYGYKNIMTLSQDTSHFASLVRNASVSGNLDAP 58
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 23.4 bits (48), Expect = 2.8
Identities = 10/39 (25%), Positives = 19/39 (48%)
Frame = +1
Query: 115 THRPRQIGTTSHIH*LASLKRFRFPDRSQTRWFLNFVNI 231
THR Q+ + L ++ R P +++ RW + N+
Sbjct: 327 THRMPQLIRKIFLKYLPTILMMRRPKKTRLRWMMEIPNV 365
>AJ849455-1|CAH60991.1| 366|Apis mellifera twist protein protein.
Length = 366
Score = 23.4 bits (48), Expect = 2.8
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = -3
Query: 880 PCRHXHDKHGSSGIRHPDLPIHXDH*SRTHHR 785
P H D SS H DLPI+ H HH+
Sbjct: 51 PSTHLMDL--SSPPEHRDLPIYQSHHHLHHHQ 80
>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
receptor protein.
Length = 1040
Score = 23.0 bits (47), Expect = 3.7
Identities = 10/37 (27%), Positives = 14/37 (37%)
Frame = -3
Query: 763 CLCCFGRSQGA*HSGRDIVMTPASHLNTFPSSFHSVC 653
C CF +Q +D+ + T P HS C
Sbjct: 606 CWHCFNCTQYQIRDHKDVTQCISCRQGTVPDETHSAC 642
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 21.8 bits (44), Expect = 8.6
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +1
Query: 61 AASPTPALACMADRVPISTHRPRQIGTTS 147
AA+P A PIST RP + TS
Sbjct: 358 AANPPSGYIRSAFGTPISTGRPATVEDTS 386
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 21.8 bits (44), Expect = 8.6
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +1
Query: 61 AASPTPALACMADRVPISTHRPRQIGTTS 147
AA+P A PIST RP + TS
Sbjct: 358 AANPPSGYIRSAFGTPISTGRPATVEDTS 386
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.8 bits (44), Expect = 8.6
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +1
Query: 61 AASPTPALACMADRVPISTHRPRQIGTTS 147
AA+P A PIST RP + TS
Sbjct: 358 AANPPSGYIRSAFGTPISTGRPATVEDTS 386
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 21.8 bits (44), Expect = 8.6
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +1
Query: 61 AASPTPALACMADRVPISTHRPRQIGTTS 147
AA+P A PIST RP + TS
Sbjct: 358 AANPPSGYIRSAFGTPISTGRPATVEDTS 386
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 21.8 bits (44), Expect = 8.6
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +1
Query: 61 AASPTPALACMADRVPISTHRPRQIGTTS 147
AA+P A PIST RP + TS
Sbjct: 358 AANPPSGYIRSAFGTPISTGRPATVEDTS 386
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 21.8 bits (44), Expect = 8.6
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +1
Query: 61 AASPTPALACMADRVPISTHRPRQIGTTS 147
AA+P A PIST RP + TS
Sbjct: 358 AANPPSGYIRSAFGTPISTGRPATVEDTS 386
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.8 bits (44), Expect = 8.6
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +1
Query: 61 AASPTPALACMADRVPISTHRPRQIGTTS 147
AA+P A PIST RP + TS
Sbjct: 426 AANPPSGYIRSAFGTPISTGRPATVEDTS 454
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.8 bits (44), Expect = 8.6
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +1
Query: 61 AASPTPALACMADRVPISTHRPRQIGTTS 147
AA+P A PIST RP + TS
Sbjct: 426 AANPPSGYIRSAFGTPISTGRPATVEDTS 454
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 21.8 bits (44), Expect = 8.6
Identities = 13/57 (22%), Positives = 26/57 (45%)
Frame = +3
Query: 144 IAYTLTGIPQTIPFSRPKSNSMVPKFRKHSMHVLRSCGVARGCDAREAEQRVPAPRV 314
I+ +T + + F P+++ M P ++ +H+L V R + R + RV
Sbjct: 320 ISICVTVVVLNVHFRSPQTHKMAPWVKRVFIHILPRLLVMRRPQYKFETNRYSSGRV 376
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 21.8 bits (44), Expect = 8.6
Identities = 13/57 (22%), Positives = 26/57 (45%)
Frame = +3
Query: 144 IAYTLTGIPQTIPFSRPKSNSMVPKFRKHSMHVLRSCGVARGCDAREAEQRVPAPRV 314
I+ +T + + F P+++ M P ++ +H+L V R + R + RV
Sbjct: 320 ISICVTVVVLNVHFRSPQTHKMAPWVKRVFIHILPRLLVMRRPQYKFETNRYSSGRV 376
>AY331183-1|AAP94623.1| 953|Apis mellifera NMDA-type glutamate
receptor 1 protein.
Length = 953
Score = 21.8 bits (44), Expect = 8.6
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = +2
Query: 470 RHETRTRLEQLFPLHL*ERFRGLSEWSRRVRADG*LRGRYASRGL 604
+H+ R + + H +++RG E + +RA + R S GL
Sbjct: 849 KHQIRKQKKMELARHAADKWRGAIEKRKTLRASIAAQRRIQSNGL 893
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 21.8 bits (44), Expect = 8.6
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1
Query: 601 VAALNAKVAGIMVPSTRHTPSGTMMGK 681
V+ ++ +AG++ P TPS MM K
Sbjct: 833 VSYMSTTMAGVIYPPVIGTPSTGMMYK 859
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 244,538
Number of Sequences: 438
Number of extensions: 5849
Number of successful extensions: 22
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28662543
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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