Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_L04
         (879 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr 1|||...   266   4e-72
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII...    29   0.66 
SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces...    28   1.5  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    28   1.5  
SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|...    27   3.5  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    27   3.5  
SPAC3A11.02 |cps3|mug188|zinc finger protein Cps3|Schizosaccharo...    27   4.7  
SPCC16C4.06c |||tRNA pseudouridylate synthase |Schizosaccharomyc...    26   6.1  

>SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 498

 Score =  266 bits (651), Expect = 4e-72
 Identities = 116/234 (49%), Positives = 161/234 (68%)
 Frame = +1

Query: 178 ILCCQCAVPIEANPSNMCVACLRAHVDITDGIPKQATLFFCRGCERYLQPPSEWVVCALE 357
           ILCC+C VP   N + MC+ C++   DIT GIP+++T+  CR CERY+QPP+ W++  LE
Sbjct: 22  ILCCECGVPTPPNAAAMCMDCIKMTTDITSGIPRESTVNHCRECERYMQPPNNWMIAPLE 81

Query: 358 SREXXXXXXXXXXXXSRVKLIDAGFAWTEPHSKRIKVKLTVQGEVIGGAVLQQTFIVEFT 537
           SRE            ++V+L+DA F WTEPHS+RIKVKLTVQ E     +LQQ+F VEF 
Sbjct: 82  SRELMAICLKKLRGLNQVRLVDANFIWTEPHSRRIKVKLTVQKEAFTNTILQQSFQVEFY 141

Query: 538 IQHQMCDACHRSEAQDYWRALVQVRQRANNRKTFYYLEQLILKHKAHENTLGIKPKHDGL 717
           + +  C  C R+     W+A+ QVRQ+  +++TF YLEQ+ILKHKAH NT+ IK   DG+
Sbjct: 142 VNNTQCPDCARTYTPHIWKAVCQVRQKVLHKRTFLYLEQIILKHKAHMNTVNIKETKDGI 201

Query: 718 DFFYSTENHARKMVDFIQSVLPIKCQHSKKLISHDIHSNIYNYXFTFSVEIVPL 879
           DF++    HA KMV+F+ +V+PI+ + S++LIS D  SN  NY FT+S+EIVP+
Sbjct: 202 DFYFGQRAHAIKMVEFLSAVVPIRYKGSEELISEDFKSNTANYKFTYSIEIVPI 255


>SPAC144.09c |sfc2||RNA polymerase III transcription factor
           TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 29.5 bits (63), Expect = 0.66
 Identities = 13/54 (24%), Positives = 22/54 (40%)
 Frame = +1

Query: 631 KTFYYLEQLILKHKAHENTLGIKPKHDGLDFFYSTENHARKMVDFIQSVLPIKC 792
           K FY    L +  + H N       +DG D  + T+ H  + ++  +   P  C
Sbjct: 62  KAFYRKSHLKIHKRCHTNVKPFSCHYDGCDAQFYTQQHLERHIEVHRKPKPYAC 115


>SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1009

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 16/75 (21%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
 Frame = +1

Query: 541  QHQMCD--ACHRSEAQDYWRALVQVRQRANNRKTFYYLEQLILKHKAHENTLGIKPKHDG 714
            QHQ C+  A + ++   Y+ AL +   R   +    +  + +L+H A  +T+    +  G
Sbjct: 810  QHQDCNIQAIYVTKPSQYFHALRRNIHRQFRKPLVIFFSKSLLRHPAARSTIDEFDEKHG 869

Query: 715  LDFFYSTENHARKMV 759
                   E H + ++
Sbjct: 870  FKLILEEEEHGKSIL 884


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = +1

Query: 760 DFIQSVL--PIKCQHSKKLISHDIHSNIYNYXFTFS 861
           DFI   L  P KC   K+    +IH N+ NY + FS
Sbjct: 815 DFIVGNLSTPPKCAIGKRNFLKNIHPNVENYAYQFS 850


>SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 595

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +1

Query: 727 YSTENHARKMVDFIQSVLPIKCQHSKKLISHDIHSNIYN 843
           Y   N+A    + +Q  L   C+ S  ++ H+I + +YN
Sbjct: 350 YPDINYAHCFAENVQGDLIFTCEISLTVLKHEIRTKLYN 388


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 16/55 (29%), Positives = 24/55 (43%)
 Frame = +1

Query: 658 ILKHKAHENTLGIKPKHDGLDFFYSTENHARKMVDFIQSVLPIKCQHSKKLISHD 822
           +L +KA+    G     D      S +N +   V+ I  +L  K +HS    SHD
Sbjct: 282 LLNYKANSTLFGGVTIWDTSLAAMSYDNSSETFVEAIHKILDTKSKHSSSKSSHD 336


>SPAC3A11.02 |cps3|mug188|zinc finger protein
           Cps3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 583

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -1

Query: 540 NCKFNYKCLLEHCSSD 493
           NCKF  KC LEH   D
Sbjct: 77  NCKFGSKCALEHVLPD 92


>SPCC16C4.06c |||tRNA pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 413

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +3

Query: 219 LKYVCSLFKGSCRHHRWNTQ 278
           LK+ C++F+G+ R H + T+
Sbjct: 220 LKHACTMFRGTHRFHSYTTE 239


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,498,430
Number of Sequences: 5004
Number of extensions: 71743
Number of successful extensions: 192
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)