Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP24_F_L04
(879 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_1016 - 22262760-22264331 235 4e-62
01_07_0232 + 42182942-42183490,42183593-42183661,42184320-421844... 113 2e-25
11_06_0514 - 24477720-24479915 30 2.1
01_03_0284 - 14595643-14595663,14595978-14596018,14596379-145967... 30 2.1
12_02_0858 + 23740589-23743233,23743362-23743503,23744778-237449... 29 6.5
01_05_0575 + 23372759-23373676,23373798-23373941,23374065-23374427 29 6.5
01_05_0250 - 19907517-19908429,19910000-19910268 28 8.6
01_05_0194 - 19107143-19108055,19110864-19111132 28 8.6
>10_08_1016 - 22262760-22264331
Length = 523
Score = 235 bits (574), Expect = 4e-62
Identities = 108/238 (45%), Positives = 153/238 (64%), Gaps = 4/238 (1%)
Frame = +1
Query: 178 ILCCQCAVPIEANPSNMCVACLRAHVDITDGIPKQATLFFCRGCERYLQPPSEWVVCALE 357
+LCC C V ++ NP+NMC C+RA VDIT+G+P+ A + +C C YLQPP W+ E
Sbjct: 24 VLCCICGVAMQPNPANMCARCIRARVDITEGVPRHAAVVYCPDCTSYLQPPRSWLRAGPE 83
Query: 358 SREXXXXXXXXXXXXS---RVKLIDAGFAWTEPHSKRIKVKLTVQGEVIGGAVLQQTFIV 528
S E RV L A F ++EPHSKR+++KL ++ EV VL+QT V
Sbjct: 84 SPELMQILLRRLNRPLARLRVSLSAAEFVFSEPHSKRLRLKLRLRREVFNAVVLEQTHPV 143
Query: 529 EFTIQHQMCDACHRSEAQ-DYWRALVQVRQRANNRKTFYYLEQLILKHKAHENTLGIKPK 705
EFT+ ++CDAC R+++ D W A+VQ+RQ +R+TF YLEQL+LKH L +
Sbjct: 144 EFTVHDRLCDACARAQSNPDQWVAVVQLRQHVPHRRTFLYLEQLLLKHGQASLALRVAAA 203
Query: 706 HDGLDFFYSTENHARKMVDFIQSVLPIKCQHSKKLISHDIHSNIYNYXFTFSVEIVPL 879
GLDFF+ + +HA ++VDF+ +V P++ Q +K+L+SHD SN+YNY TFSVEI P+
Sbjct: 204 PGGLDFFFGSRSHAARLVDFLATVAPVQTQTAKQLVSHDTKSNVYNYKHTFSVEICPI 261
>01_07_0232 +
42182942-42183490,42183593-42183661,42184320-42184451,
42184547-42184600,42184714-42184758,42185383-42185522,
42185777-42185902,42185985-42186002,42186631-42187276,
42188121-42188843
Length = 833
Score = 113 bits (272), Expect = 2e-25
Identities = 55/160 (34%), Positives = 83/160 (51%), Gaps = 7/160 (4%)
Frame = +1
Query: 124 MKMEYFAPENASLSNNTRILCCQCAVPIEANPSNMCVACLRAHVDITDGIPKQATLFFCR 303
+ M++ P + +CC C VP+ N +N C C+R+ VDI G+P+ A + C
Sbjct: 419 LSMQFLPPRPEPAAAARTSICCTCGVPMAPNAANTCALCIRSRVDIAAGVPRHADVVHCP 478
Query: 304 GCERYLQPPSEWVVCALESREXXXXXXXXXXXXSR---VKLIDAGFAWTEPHSKRIKVKL 474
C YL PP W+ A ES E V L A F +TEPHS+R+ ++L
Sbjct: 479 SCSSYLHPPRLWLRAAPESPELMSLLLRRVDRHIARLGVALAAAEFVFTEPHSRRLMLRL 538
Query: 475 TVQGEVI----GGAVLQQTFIVEFTIQHQMCDACHRSEAQ 582
++GEV+ GG L+Q +VEF + ++CDAC + A+
Sbjct: 539 RLRGEVLHGSGGGVTLEQGHVVEFAVHDRLCDACAMARAR 578
>11_06_0514 - 24477720-24479915
Length = 731
Score = 30.3 bits (65), Expect = 2.1
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = +1
Query: 688 LGIKPKHDGLDFFYSTE-NHARKMVDFIQSVLPIKCQHSKKLISHDIHSNIYNYXFTFSV 864
L + + D L FF E A K+V+ I+ VL +C HSK L+ H + FT +
Sbjct: 246 LSFQDRIDSLSFFRRLEMEQAYKVVE-IELVLMYECLHSKALVIHGRLGRGLRF-FTLAA 303
Query: 865 EIVPL 879
+V L
Sbjct: 304 PVVSL 308
>01_03_0284 -
14595643-14595663,14595978-14596018,14596379-14596732,
14597023-14597494,14597524-14600001
Length = 1121
Score = 30.3 bits (65), Expect = 2.1
Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 7/78 (8%)
Frame = +1
Query: 559 ACHRSEAQDYWRALVQVRQRANNRKTFYYLEQLI--LKHKAHENTLGIK-----PKHDGL 717
A HR A+ + AL +V AN+ + E L K H LG+ P H+ +
Sbjct: 60 ASHREGAKAWLEALKKVAYEANDIFDEFKYEALRREAKKNGHYRELGMNAVKLFPTHNRI 119
Query: 718 DFFYSTENHARKMVDFIQ 771
F Y N R++V FI+
Sbjct: 120 VFRYRMGNKLRRIVQFIE 137
>12_02_0858 +
23740589-23743233,23743362-23743503,23744778-23744990,
23745083-23745190,23745378-23745587,23745881-23746055,
23746197-23746264
Length = 1186
Score = 28.7 bits (61), Expect = 6.5
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = -2
Query: 401 NPFNLLRQRAKSSRDSNAHTTHSEGGCKYLSQPLQKNNVAC 279
+P + Q SS S+ H S G KY+ Q+ VAC
Sbjct: 146 HPVFPVTQGVSSSNSSSQHVVSSSGEAKYIGNSGQEMQVAC 186
>01_05_0575 + 23372759-23373676,23373798-23373941,23374065-23374427
Length = 474
Score = 28.7 bits (61), Expect = 6.5
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = +1
Query: 715 LDFFYSTENHARKMVDFIQSVLPIKC--QHSKKLISHDIHSN 834
+D ++ + HA+ F Q V P++C H KK++ HD H +
Sbjct: 357 IDDEFTGQPHAK----FWQEVCPVECINSHVKKIVFHDFHGD 394
>01_05_0250 - 19907517-19908429,19910000-19910268
Length = 393
Score = 28.3 bits (60), Expect = 8.6
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +1
Query: 268 GIPKQATLFFCRGCERYLQP 327
GIP A+ F C+ CE LQP
Sbjct: 78 GIPLAASTFLCQRCETVLQP 97
>01_05_0194 - 19107143-19108055,19110864-19111132
Length = 393
Score = 28.3 bits (60), Expect = 8.6
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +1
Query: 268 GIPKQATLFFCRGCERYLQP 327
GIP A+ F C+ CE LQP
Sbjct: 78 GIPLAASTFLCQRCETVLQP 97
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,247,706
Number of Sequences: 37544
Number of extensions: 413181
Number of successful extensions: 872
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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