Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_L04
         (879 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC013317-1|AAH13317.1|  503|Homo sapiens NMD3 homolog (S. cerevi...   329   9e-90
AF132941-1|AAD27716.1|  503|Homo sapiens CGI-07 protein protein.      329   9e-90
AY164485-1|AAO32798.1| 1732|Homo sapiens polycystic kidney disea...    35   0.34 

>BC013317-1|AAH13317.1|  503|Homo sapiens NMD3 homolog (S.
           cerevisiae) protein.
          Length = 503

 Score =  329 bits (808), Expect = 9e-90
 Identities = 147/251 (58%), Positives = 191/251 (76%), Gaps = 1/251 (0%)
 Frame = +1

Query: 130 MEYFAPENASLSNNTRILCCQCAVPIEANPSNMCVACLRAHVDITDGIPKQATLFFCRGC 309
           MEY A E+   S    ILCC+C VPI  NP+N+CVACLR+ VDI+ GIPKQ ++ FC+ C
Sbjct: 1   MEYMA-ESTDRSPG-HILCCECGVPISPNPANICVACLRSKVDISQGIPKQVSISFCKQC 58

Query: 310 ERYLQPPSEWVVCALESREXXXXXXXXXXXX-SRVKLIDAGFAWTEPHSKRIKVKLTVQG 486
           +RY QPP  W+ CALESRE             S+V+L+DAGF WTEPHSKR+KVKLT+Q 
Sbjct: 59  QRYFQPPGTWIQCALESRELLALCLKKIKAPLSKVRLVDAGFVWTEPHSKRLKVKLTIQK 118

Query: 487 EVIGGAVLQQTFIVEFTIQHQMCDACHRSEAQDYWRALVQVRQRANNRKTFYYLEQLILK 666
           EV+ GA+LQQ F+V++ +Q QMC  CHR EA+D+W+A++QVRQ+  ++KTFYYLEQLILK
Sbjct: 119 EVMNGAILQQVFVVDYVVQSQMCGDCHRVEAKDFWKAVIQVRQKTLHKKTFYYLEQLILK 178

Query: 667 HKAHENTLGIKPKHDGLDFFYSTENHARKMVDFIQSVLPIKCQHSKKLISHDIHSNIYNY 846
           +  H+NTL IK  HDGLDF+YS++ HA+KMV+F+Q  +P + + S++LIS DIHSN YNY
Sbjct: 179 YGMHQNTLRIKEIHDGLDFYYSSKQHAQKMVEFLQCTVPCRYKASQRLISQDIHSNTYNY 238

Query: 847 XFTFSVEIVPL 879
             TFSVEIVP+
Sbjct: 239 KSTFSVEIVPI 249


>AF132941-1|AAD27716.1|  503|Homo sapiens CGI-07 protein protein.
          Length = 503

 Score =  329 bits (808), Expect = 9e-90
 Identities = 147/251 (58%), Positives = 191/251 (76%), Gaps = 1/251 (0%)
 Frame = +1

Query: 130 MEYFAPENASLSNNTRILCCQCAVPIEANPSNMCVACLRAHVDITDGIPKQATLFFCRGC 309
           MEY A E+   S    ILCC+C VPI  NP+N+CVACLR+ VDI+ GIPKQ ++ FC+ C
Sbjct: 1   MEYMA-ESTDRSPG-HILCCECGVPISPNPANICVACLRSKVDISQGIPKQVSISFCKQC 58

Query: 310 ERYLQPPSEWVVCALESREXXXXXXXXXXXX-SRVKLIDAGFAWTEPHSKRIKVKLTVQG 486
           +RY QPP  W+ CALESRE             S+V+L+DAGF WTEPHSKR+KVKLT+Q 
Sbjct: 59  QRYFQPPGTWIQCALESRELLALCLKKIKAPLSKVRLVDAGFVWTEPHSKRLKVKLTIQK 118

Query: 487 EVIGGAVLQQTFIVEFTIQHQMCDACHRSEAQDYWRALVQVRQRANNRKTFYYLEQLILK 666
           EV+ GA+LQQ F+V++ +Q QMC  CHR EA+D+W+A++QVRQ+  ++KTFYYLEQLILK
Sbjct: 119 EVMNGAILQQVFVVDYVVQSQMCGDCHRVEAKDFWKAVIQVRQKTLHKKTFYYLEQLILK 178

Query: 667 HKAHENTLGIKPKHDGLDFFYSTENHARKMVDFIQSVLPIKCQHSKKLISHDIHSNIYNY 846
           +  H+NTL IK  HDGLDF+YS++ HA+KMV+F+Q  +P + + S++LIS DIHSN YNY
Sbjct: 179 YGMHQNTLRIKEIHDGLDFYYSSKQHAQKMVEFLQCTVPCRYKASQRLISQDIHSNTYNY 238

Query: 847 XFTFSVEIVPL 879
             TFSVEIVP+
Sbjct: 239 KSTFSVEIVPI 249


>AY164485-1|AAO32798.1| 1732|Homo sapiens polycystic kidney disease
            1-like 3 protein.
          Length = 1732

 Score = 35.1 bits (77), Expect = 0.34
 Identities = 23/98 (23%), Positives = 49/98 (50%), Gaps = 1/98 (1%)
 Frame = +1

Query: 544  HQMCDACHRSEAQDYWRALVQVRQRANNRKTFYYLEQLILKHKAHENTLGIKPKHDGLDF 723
            H     CH+ + + +W  +V      N+     YL +++ + K+H  TLG+   H   DF
Sbjct: 1047 HLEGQGCHQ-QGERHWARVVP----ENHHHFCCYLHRVLQRLKSHLGTLGLTQGHQSCDF 1101

Query: 724  FYSTENHARKMVDFIQS-VLPIKCQHSKKLISHDIHSN 834
                 +  +K+ + +++ +LP + + S+++ S  I S+
Sbjct: 1102 L-DAASQLQKLQELLETHILPTEQEPSREVTSFAILSS 1138


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,954,855
Number of Sequences: 237096
Number of extensions: 2397218
Number of successful extensions: 4328
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4326
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11215125244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)