Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP24_F_L03
(928 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 36 0.031
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 36 0.054
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 36 0.054
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 36 0.054
U53153-1|AAC69039.4| 715|Caenorhabditis elegans Hypothetical pr... 33 0.22
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 33 0.22
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 33 0.22
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 33 0.22
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 30 2.0
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 30 2.0
AC024809-7|AAF59540.1| 315|Caenorhabditis elegans Hypothetical ... 29 4.7
U41031-3|AAA82620.1| 164|Caenorhabditis elegans Hypothetical pr... 29 6.2
U23172-13|ABH03527.1| 282|Caenorhabditis elegans Hypothetical p... 29 6.2
U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical p... 29 6.2
AL132864-1|CAB63392.1| 613|Caenorhabditis elegans Hypothetical ... 29 6.2
Z81503-1|CAB04111.1| 305|Caenorhabditis elegans Hypothetical pr... 28 8.2
Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical pr... 28 8.2
V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein ( Caeno... 28 8.2
J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.ele... 28 8.2
AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen stru... 28 8.2
AF106580-3|AAC78205.1| 881|Caenorhabditis elegans Temporarily a... 28 8.2
AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical... 28 8.2
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 28 8.2
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 36.3 bits (80), Expect = 0.031
Identities = 23/73 (31%), Positives = 24/73 (32%)
Frame = +2
Query: 476 GGGPPGXXXXLFXXPPXXXXEGXXXGKTPXXXGGXXXXGXXPPPPXGGXXXXXXXPPXXX 655
GGGP + P G G P GG PPPP GG PP
Sbjct: 1534 GGGPGMGPSQYYHDSPQN--RGPPMGGLPPPHGGMNGWRGGPPPPRGG-SHCQGPPPLMG 1590
Query: 656 XPXPXXXXXPPPP 694
P P PP P
Sbjct: 1591 GPPPRLGMPPPGP 1603
Score = 29.9 bits (64), Expect = 2.7
Identities = 16/48 (33%), Positives = 17/48 (35%)
Frame = +3
Query: 552 GKPPXXGGXXXFXGXXPPPPXGGGXXXXXXPXXXXXPXPXXXXXXPPP 695
G PP GG + G PPPP GG P P PP
Sbjct: 1558 GLPPPHGGMNGWRGG-PPPPRGGSHCQGPPPLMGGPPPRLGMPPPGPP 1604
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 35.5 bits (78), Expect = 0.054
Identities = 23/81 (28%), Positives = 23/81 (28%), Gaps = 3/81 (3%)
Frame = +2
Query: 461 APXXXGGGPPGXXXXLFXXPPXXXXEGXXXGKTPXXXGGXXXX---GXXPPPPXGGXXXX 631
AP GG PP G P G G PPPP GG
Sbjct: 695 APSTSAGGSSALPPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPI 754
Query: 632 XXXPPXXXXPXPXXXXXPPPP 694
PP P PPPP
Sbjct: 755 SGGPPPPPPPPGGCPPPPPPP 775
Score = 34.7 bits (76), Expect = 0.095
Identities = 16/46 (34%), Positives = 16/46 (34%)
Frame = +3
Query: 558 PPXXGGXXXFXGXXPPPPXGGGXXXXXXPXXXXXPXPXXXXXXPPP 695
PP GG G PPPP GG P P PPP
Sbjct: 729 PPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPP 774
Score = 33.5 bits (73), Expect = 0.22
Identities = 21/67 (31%), Positives = 21/67 (31%)
Frame = -1
Query: 619 PPXGGGGXXPXXXXXPPXXGGFPXXXPLXXXXXXXXKKXXXPXRGXPAPXXGGXXXPPXX 440
PP GG P PP GG P P P G P GG PP
Sbjct: 707 PPITGG--PPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPP 764
Query: 439 PXXXXPP 419
P PP
Sbjct: 765 PGGCPPP 771
Score = 30.7 bits (66), Expect = 1.5
Identities = 21/70 (30%), Positives = 21/70 (30%)
Frame = -2
Query: 645 GGXXXXXXXPPXGGGGXXPXXXXPPXXXGVFPXXXPSXXXXGGXXKXXXXXPGGPPPXFX 466
GG PP GG P PP P GG P PPP
Sbjct: 711 GGPPPPPGLPPITGG---PPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPP-G 766
Query: 465 GAXXPPPXXP 436
G PPP P
Sbjct: 767 GCPPPPPPPP 776
Score = 29.9 bits (64), Expect = 2.7
Identities = 16/46 (34%), Positives = 16/46 (34%)
Frame = +3
Query: 558 PPXXGGXXXFXGXXPPPPXGGGXXXXXXPXXXXXPXPXXXXXXPPP 695
PP GG G PPPP G P P P PPP
Sbjct: 745 PPPPGGLPPISGGPPPPPPPPG----GCPPPPPPPPPGGFKGGPPP 786
Score = 28.7 bits (61), Expect = 6.2
Identities = 25/90 (27%), Positives = 26/90 (28%), Gaps = 7/90 (7%)
Frame = +2
Query: 446 GGGXXAPXXXGGGPPGXXXX-LFXXPPXXXXEGXXXGKT-----PXXXGGXXXX-GXXPP 604
GG P GG PP + PP G T P GG G PP
Sbjct: 701 GGSSALPPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPP 760
Query: 605 PPXGGXXXXXXXPPXXXXPXPXXXXXPPPP 694
PP PP PPPP
Sbjct: 761 PPPPPGGCPPPPPPPPPGGFKGGPPPPPPP 790
Score = 28.7 bits (61), Expect = 6.2
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = -3
Query: 623 PXPPXGGGGXXPKXXXPPXXXGFSXXXPPP 534
P PP G P PP GF PPP
Sbjct: 758 PPPPPPPPGGCPPPPPPPPPGGFKGGPPPP 787
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 35.5 bits (78), Expect = 0.054
Identities = 23/81 (28%), Positives = 23/81 (28%), Gaps = 3/81 (3%)
Frame = +2
Query: 461 APXXXGGGPPGXXXXLFXXPPXXXXEGXXXGKTPXXXGGXXXX---GXXPPPPXGGXXXX 631
AP GG PP G P G G PPPP GG
Sbjct: 695 APSTSAGGSSALPPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPI 754
Query: 632 XXXPPXXXXPXPXXXXXPPPP 694
PP P PPPP
Sbjct: 755 SGGPPPPPPPPGGCPPPPPPP 775
Score = 34.7 bits (76), Expect = 0.095
Identities = 16/46 (34%), Positives = 16/46 (34%)
Frame = +3
Query: 558 PPXXGGXXXFXGXXPPPPXGGGXXXXXXPXXXXXPXPXXXXXXPPP 695
PP GG G PPPP GG P P PPP
Sbjct: 729 PPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPP 774
Score = 33.5 bits (73), Expect = 0.22
Identities = 21/67 (31%), Positives = 21/67 (31%)
Frame = -1
Query: 619 PPXGGGGXXPXXXXXPPXXGGFPXXXPLXXXXXXXXKKXXXPXRGXPAPXXGGXXXPPXX 440
PP GG P PP GG P P P G P GG PP
Sbjct: 707 PPITGG--PPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPP 764
Query: 439 PXXXXPP 419
P PP
Sbjct: 765 PGGCPPP 771
Score = 30.7 bits (66), Expect = 1.5
Identities = 21/70 (30%), Positives = 21/70 (30%)
Frame = -2
Query: 645 GGXXXXXXXPPXGGGGXXPXXXXPPXXXGVFPXXXPSXXXXGGXXKXXXXXPGGPPPXFX 466
GG PP GG P PP P GG P PPP
Sbjct: 711 GGPPPPPGLPPITGG---PPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPP-G 766
Query: 465 GAXXPPPXXP 436
G PPP P
Sbjct: 767 GCPPPPPPPP 776
Score = 29.9 bits (64), Expect = 2.7
Identities = 16/46 (34%), Positives = 16/46 (34%)
Frame = +3
Query: 558 PPXXGGXXXFXGXXPPPPXGGGXXXXXXPXXXXXPXPXXXXXXPPP 695
PP GG G PPPP G P P P PPP
Sbjct: 745 PPPPGGLPPISGGPPPPPPPPG----GCPPPPPPPPPGGFKGGPPP 786
Score = 28.7 bits (61), Expect = 6.2
Identities = 25/90 (27%), Positives = 26/90 (28%), Gaps = 7/90 (7%)
Frame = +2
Query: 446 GGGXXAPXXXGGGPPGXXXX-LFXXPPXXXXEGXXXGKT-----PXXXGGXXXX-GXXPP 604
GG P GG PP + PP G T P GG G PP
Sbjct: 701 GGSSALPPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPP 760
Query: 605 PPXGGXXXXXXXPPXXXXPXPXXXXXPPPP 694
PP PP PPPP
Sbjct: 761 PPPPPGGCPPPPPPPPPGGFKGGPPPPPPP 790
Score = 28.7 bits (61), Expect = 6.2
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = -3
Query: 623 PXPPXGGGGXXPKXXXPPXXXGFSXXXPPP 534
P PP G P PP GF PPP
Sbjct: 758 PPPPPPPPGGCPPPPPPPPPGGFKGGPPPP 787
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 35.5 bits (78), Expect = 0.054
Identities = 23/81 (28%), Positives = 23/81 (28%), Gaps = 3/81 (3%)
Frame = +2
Query: 461 APXXXGGGPPGXXXXLFXXPPXXXXEGXXXGKTPXXXGGXXXX---GXXPPPPXGGXXXX 631
AP GG PP G P G G PPPP GG
Sbjct: 278 APSTSAGGSSALPPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPI 337
Query: 632 XXXPPXXXXPXPXXXXXPPPP 694
PP P PPPP
Sbjct: 338 SGGPPPPPPPPGGCPPPPPPP 358
Score = 34.7 bits (76), Expect = 0.095
Identities = 16/46 (34%), Positives = 16/46 (34%)
Frame = +3
Query: 558 PPXXGGXXXFXGXXPPPPXGGGXXXXXXPXXXXXPXPXXXXXXPPP 695
PP GG G PPPP GG P P PPP
Sbjct: 312 PPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPP 357
Score = 33.5 bits (73), Expect = 0.22
Identities = 21/67 (31%), Positives = 21/67 (31%)
Frame = -1
Query: 619 PPXGGGGXXPXXXXXPPXXGGFPXXXPLXXXXXXXXKKXXXPXRGXPAPXXGGXXXPPXX 440
PP GG P PP GG P P P G P GG PP
Sbjct: 290 PPITGG--PPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPP 347
Query: 439 PXXXXPP 419
P PP
Sbjct: 348 PGGCPPP 354
Score = 30.7 bits (66), Expect = 1.5
Identities = 21/70 (30%), Positives = 21/70 (30%)
Frame = -2
Query: 645 GGXXXXXXXPPXGGGGXXPXXXXPPXXXGVFPXXXPSXXXXGGXXKXXXXXPGGPPPXFX 466
GG PP GG P PP P GG P PPP
Sbjct: 294 GGPPPPPGLPPITGG---PPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPP-G 349
Query: 465 GAXXPPPXXP 436
G PPP P
Sbjct: 350 GCPPPPPPPP 359
Score = 29.9 bits (64), Expect = 2.7
Identities = 16/46 (34%), Positives = 16/46 (34%)
Frame = +3
Query: 558 PPXXGGXXXFXGXXPPPPXGGGXXXXXXPXXXXXPXPXXXXXXPPP 695
PP GG G PPPP G P P P PPP
Sbjct: 328 PPPPGGLPPISGGPPPPPPPPG----GCPPPPPPPPPGGFKGGPPP 369
Score = 28.7 bits (61), Expect = 6.2
Identities = 25/90 (27%), Positives = 26/90 (28%), Gaps = 7/90 (7%)
Frame = +2
Query: 446 GGGXXAPXXXGGGPPGXXXX-LFXXPPXXXXEGXXXGKT-----PXXXGGXXXX-GXXPP 604
GG P GG PP + PP G T P GG G PP
Sbjct: 284 GGSSALPPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPP 343
Query: 605 PPXGGXXXXXXXPPXXXXPXPXXXXXPPPP 694
PP PP PPPP
Sbjct: 344 PPPPPGGCPPPPPPPPPGGFKGGPPPPPPP 373
Score = 28.7 bits (61), Expect = 6.2
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = -3
Query: 623 PXPPXGGGGXXPKXXXPPXXXGFSXXXPPP 534
P PP G P PP GF PPP
Sbjct: 341 PPPPPPPPGGCPPPPPPPPPGGFKGGPPPP 370
>U53153-1|AAC69039.4| 715|Caenorhabditis elegans Hypothetical
protein T19A5.3a protein.
Length = 715
Score = 33.5 bits (73), Expect = 0.22
Identities = 25/88 (28%), Positives = 26/88 (29%), Gaps = 5/88 (5%)
Frame = -2
Query: 693 GGGGXXXXXGXGXXXXGGXXXXXXXPPXGGGGXXPXXXXPPXXXGVFPXXXPS--XXXXG 520
GGGG G G GG P GG P P G P+ G
Sbjct: 482 GGGGGGGFGGGGGGFGGGGGGFGSGSPFGGAAPSPPSGPDPDFGGDTAAAGPTEEEFFTG 541
Query: 519 GXXKXXXXXPGGP---PPXFXGAXXPPP 445
P G PP F G PPP
Sbjct: 542 ESALSRSKGPTGDGYGPPVFPGGAPPPP 569
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 33.5 bits (73), Expect = 0.22
Identities = 23/84 (27%), Positives = 24/84 (28%), Gaps = 1/84 (1%)
Frame = +2
Query: 446 GGGXXAPXXXGGGPPGXXXXLFXXPPXXXXEGXXXGKTPXXXGGXXXXGXXPPPPXGGXX 625
G G P G PP PP G +P PPPP G
Sbjct: 251 GSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPP--PPPPPRGSPP 308
Query: 626 XXXXXPP-XXXXPXPXXXXXPPPP 694
PP P P PPPP
Sbjct: 309 TGSLPPPQAGGSPPPAGTGSPPPP 332
Score = 31.1 bits (67), Expect = 1.2
Identities = 17/59 (28%), Positives = 17/59 (28%)
Frame = -3
Query: 623 PXPPXGGGGXXPKXXXPPXXXGFSXXXPPPXXXXXGXXKXXXPXQGXPRPXXGGXXXPP 447
P PP G P PP S PPP P G P G PP
Sbjct: 273 PPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPP 331
Score = 29.5 bits (63), Expect = 3.6
Identities = 19/68 (27%), Positives = 19/68 (27%)
Frame = -1
Query: 619 PPXGGGGXXPXXXXXPPXXGGFPXXXPLXXXXXXXXKKXXXPXRGXPAPXXGGXXXPPXX 440
PP G G P PP G P P G P P G PP
Sbjct: 247 PPLAGSGSPPP----PPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPP 302
Query: 439 PXXXXPPG 416
P P G
Sbjct: 303 PRGSPPTG 310
Score = 28.3 bits (60), Expect = 8.2
Identities = 17/68 (25%), Positives = 17/68 (25%)
Frame = -1
Query: 622 PPPXGGGGXXPXXXXXPPXXGGFPXXXPLXXXXXXXXKKXXXPXRGXPAPXXGGXXXPPX 443
PPP G P PP G P P G P G PP
Sbjct: 265 PPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPA 324
Query: 442 XPXXXXPP 419
PP
Sbjct: 325 GTGSPPPP 332
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 33.5 bits (73), Expect = 0.22
Identities = 23/84 (27%), Positives = 24/84 (28%), Gaps = 1/84 (1%)
Frame = +2
Query: 446 GGGXXAPXXXGGGPPGXXXXLFXXPPXXXXEGXXXGKTPXXXGGXXXXGXXPPPPXGGXX 625
G G P G PP PP G +P PPPP G
Sbjct: 272 GSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPP--PPPPPRGSPP 329
Query: 626 XXXXXPP-XXXXPXPXXXXXPPPP 694
PP P P PPPP
Sbjct: 330 TGSLPPPQAGGSPPPAGTGSPPPP 353
Score = 31.1 bits (67), Expect = 1.2
Identities = 17/59 (28%), Positives = 17/59 (28%)
Frame = -3
Query: 623 PXPPXGGGGXXPKXXXPPXXXGFSXXXPPPXXXXXGXXKXXXPXQGXPRPXXGGXXXPP 447
P PP G P PP S PPP P G P G PP
Sbjct: 294 PPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPP 352
Score = 29.5 bits (63), Expect = 3.6
Identities = 19/68 (27%), Positives = 19/68 (27%)
Frame = -1
Query: 619 PPXGGGGXXPXXXXXPPXXGGFPXXXPLXXXXXXXXKKXXXPXRGXPAPXXGGXXXPPXX 440
PP G G P PP G P P G P P G PP
Sbjct: 268 PPLAGSGSPPP----PPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPP 323
Query: 439 PXXXXPPG 416
P P G
Sbjct: 324 PRGSPPTG 331
Score = 28.3 bits (60), Expect = 8.2
Identities = 17/68 (25%), Positives = 17/68 (25%)
Frame = -1
Query: 622 PPPXGGGGXXPXXXXXPPXXGGFPXXXPLXXXXXXXXKKXXXPXRGXPAPXXGGXXXPPX 443
PPP G P PP G P P G P G PP
Sbjct: 286 PPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPA 345
Query: 442 XPXXXXPP 419
PP
Sbjct: 346 GTGSPPPP 353
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 33.5 bits (73), Expect = 0.22
Identities = 23/84 (27%), Positives = 24/84 (28%), Gaps = 1/84 (1%)
Frame = +2
Query: 446 GGGXXAPXXXGGGPPGXXXXLFXXPPXXXXEGXXXGKTPXXXGGXXXXGXXPPPPXGGXX 625
G G P G PP PP G +P PPPP G
Sbjct: 257 GSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPP--PPPPPRGSPP 314
Query: 626 XXXXXPP-XXXXPXPXXXXXPPPP 694
PP P P PPPP
Sbjct: 315 TGSLPPPQAGGSPPPAGTGSPPPP 338
Score = 31.1 bits (67), Expect = 1.2
Identities = 17/59 (28%), Positives = 17/59 (28%)
Frame = -3
Query: 623 PXPPXGGGGXXPKXXXPPXXXGFSXXXPPPXXXXXGXXKXXXPXQGXPRPXXGGXXXPP 447
P PP G P PP S PPP P G P G PP
Sbjct: 279 PPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPP 337
Score = 29.5 bits (63), Expect = 3.6
Identities = 19/68 (27%), Positives = 19/68 (27%)
Frame = -1
Query: 619 PPXGGGGXXPXXXXXPPXXGGFPXXXPLXXXXXXXXKKXXXPXRGXPAPXXGGXXXPPXX 440
PP G G P PP G P P G P P G PP
Sbjct: 253 PPLAGSGSPPP----PPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPP 308
Query: 439 PXXXXPPG 416
P P G
Sbjct: 309 PRGSPPTG 316
Score = 28.3 bits (60), Expect = 8.2
Identities = 17/68 (25%), Positives = 17/68 (25%)
Frame = -1
Query: 622 PPPXGGGGXXPXXXXXPPXXGGFPXXXPLXXXXXXXXKKXXXPXRGXPAPXXGGXXXPPX 443
PPP G P PP G P P G P G PP
Sbjct: 271 PPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPA 330
Query: 442 XPXXXXPP 419
PP
Sbjct: 331 GTGSPPPP 338
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 30.3 bits (65), Expect = 2.0
Identities = 22/77 (28%), Positives = 22/77 (28%), Gaps = 6/77 (7%)
Frame = +2
Query: 482 GPPGXXXXLFXXPPXXXXEGXXXGKTPXXXGGXXXXGXXPPPP----XGGXXXXXXXPPX 649
GPPG PP G P G G PPPP PP
Sbjct: 309 GPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPP 368
Query: 650 XXXPXP--XXXXXPPPP 694
P P PPPP
Sbjct: 369 SRPPAPPSGHGMIPPPP 385
Score = 29.5 bits (63), Expect = 3.6
Identities = 12/32 (37%), Positives = 12/32 (37%)
Frame = +2
Query: 599 PPPPXGGXXXXXXXPPXXXXPXPXXXXXPPPP 694
PPPP G PP P P PPP
Sbjct: 288 PPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPP 319
Score = 29.5 bits (63), Expect = 3.6
Identities = 21/78 (26%), Positives = 21/78 (26%), Gaps = 1/78 (1%)
Frame = +2
Query: 464 PXXXGGGPPGXXXXLFXXPPXXXXEGXXXGKTPXXXGGXXXXGXXPPPPXG-GXXXXXXX 640
P G PP P G P G G PPPP G
Sbjct: 290 PPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPP 349
Query: 641 PPXXXXPXPXXXXXPPPP 694
PP P PPPP
Sbjct: 350 PPPPRYPSAGPGMYPPPP 367
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 30.3 bits (65), Expect = 2.0
Identities = 22/77 (28%), Positives = 22/77 (28%), Gaps = 6/77 (7%)
Frame = +2
Query: 482 GPPGXXXXLFXXPPXXXXEGXXXGKTPXXXGGXXXXGXXPPPP----XGGXXXXXXXPPX 649
GPPG PP G P G G PPPP PP
Sbjct: 319 GPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPP 378
Query: 650 XXXPXP--XXXXXPPPP 694
P P PPPP
Sbjct: 379 SRPPAPPSGHGMIPPPP 395
Score = 29.5 bits (63), Expect = 3.6
Identities = 12/32 (37%), Positives = 12/32 (37%)
Frame = +2
Query: 599 PPPPXGGXXXXXXXPPXXXXPXPXXXXXPPPP 694
PPPP G PP P P PPP
Sbjct: 298 PPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPP 329
Score = 29.5 bits (63), Expect = 3.6
Identities = 21/78 (26%), Positives = 21/78 (26%), Gaps = 1/78 (1%)
Frame = +2
Query: 464 PXXXGGGPPGXXXXLFXXPPXXXXEGXXXGKTPXXXGGXXXXGXXPPPPXG-GXXXXXXX 640
P G PP P G P G G PPPP G
Sbjct: 300 PPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPP 359
Query: 641 PPXXXXPXPXXXXXPPPP 694
PP P PPPP
Sbjct: 360 PPPPRYPSAGPGMYPPPP 377
>AC024809-7|AAF59540.1| 315|Caenorhabditis elegans Hypothetical
protein Y53G8AR.9 protein.
Length = 315
Score = 29.1 bits (62), Expect = 4.7
Identities = 13/32 (40%), Positives = 13/32 (40%)
Frame = -2
Query: 693 GGGGXXXXXGXGXXXXGGXXXXXXXPPXGGGG 598
GGGG G G G PP GGGG
Sbjct: 191 GGGGMGGGGGSGGSGGGSGRFPPPPPPYGGGG 222
>U41031-3|AAA82620.1| 164|Caenorhabditis elegans Hypothetical
protein C16B8.3 protein.
Length = 164
Score = 28.7 bits (61), Expect = 6.2
Identities = 18/54 (33%), Positives = 19/54 (35%), Gaps = 1/54 (1%)
Frame = -3
Query: 623 PXPPXGGG-GXXPKXXXPPXXXGFSXXXPPPXXXXXGXXKXXXPXQGXPRPXXG 465
P PP G G G P PP G + PPP G Q P P G
Sbjct: 40 PPPPVGAGVGYAPP---PPRPYGATYAPPPPMGIGAGVNPSGYVQQAPPLPTQG 90
>U23172-13|ABH03527.1| 282|Caenorhabditis elegans Hypothetical
protein F25B5.7c protein.
Length = 282
Score = 28.7 bits (61), Expect = 6.2
Identities = 23/67 (34%), Positives = 24/67 (35%)
Frame = -3
Query: 617 PPXGGGGXXPKXXXPPXXXGFSXXXPPPXXXXXGXXKXXXPXQGXPRPXXGGXXXPPXAX 438
PP GGG P+ PP G PP G QG P P GG PP
Sbjct: 155 PPLMGGGGDPRG--PPGGMG-----GPPGHGGMGGPPGHG-GQGGP-PGHGGMGGPPPGQ 205
Query: 437 XXXGXPG 417
G PG
Sbjct: 206 GGPGGPG 212
>U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical
protein F25B5.7a protein.
Length = 562
Score = 28.7 bits (61), Expect = 6.2
Identities = 23/67 (34%), Positives = 24/67 (35%)
Frame = -3
Query: 617 PPXGGGGXXPKXXXPPXXXGFSXXXPPPXXXXXGXXKXXXPXQGXPRPXXGGXXXPPXAX 438
PP GGG P+ PP G PP G QG P P GG PP
Sbjct: 435 PPLMGGGGDPRG--PPGGMG-----GPPGHGGMGGPPGHG-GQGGP-PGHGGMGGPPPGQ 485
Query: 437 XXXGXPG 417
G PG
Sbjct: 486 GGPGGPG 492
>AL132864-1|CAB63392.1| 613|Caenorhabditis elegans Hypothetical
protein Y53H1A.1 protein.
Length = 613
Score = 28.7 bits (61), Expect = 6.2
Identities = 21/75 (28%), Positives = 22/75 (29%), Gaps = 4/75 (5%)
Frame = +2
Query: 482 GPPGXXXXLFXXPPXXXXEGXXXGKTPXXXGGXXXXGXXPPPP----XGGXXXXXXXPPX 649
GPPG PP +G G P G PPP G PP
Sbjct: 77 GPPGPSGP--SGPPVYHNQGPPRGYPPPPPQGADTWRGAPPPAHHGHFGPPGHHFQGPPQ 134
Query: 650 XXXPXPXXXXXPPPP 694
P P P PP
Sbjct: 135 HFPPGPPRPHFPGPP 149
>Z81503-1|CAB04111.1| 305|Caenorhabditis elegans Hypothetical
protein F14F7.1 protein.
Length = 305
Score = 28.3 bits (60), Expect = 8.2
Identities = 23/82 (28%), Positives = 23/82 (28%)
Frame = +2
Query: 449 GGXXAPXXXGGGPPGXXXXLFXXPPXXXXEGXXXGKTPXXXGGXXXXGXXPPPPXGGXXX 628
GG P GGG G P G GK P G G P GG
Sbjct: 84 GGYAQPQGGGGGGGGQCSTCCR--PGPPGAGGTPGK-PGRPGAPGAWGMPGNPGKGGSGP 140
Query: 629 XXXXPPXXXXPXPXXXXXPPPP 694
P P P PP P
Sbjct: 141 CHPVVPTPCKPCPGGRPGPPGP 162
>Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical
protein W01B6.7 protein.
Length = 301
Score = 28.3 bits (60), Expect = 8.2
Identities = 20/65 (30%), Positives = 21/65 (32%)
Frame = -1
Query: 610 GGGGXXPXXXXXPPXXGGFPXXXPLXXXXXXXXKKXXXPXRGXPAPXXGGXXXPPXXPXX 431
GGGG PP GG P P P +G AP PP P
Sbjct: 94 GGGGCDGCCNPGPPGPGGSP-GKPGKPGKPGAPGAPGNPGKGASAPCE-PVTQPPCQPCP 151
Query: 430 XXPPG 416
PPG
Sbjct: 152 GGPPG 156
>V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-2 coding for a collagen.
).
Length = 301
Score = 28.3 bits (60), Expect = 8.2
Identities = 20/65 (30%), Positives = 21/65 (32%)
Frame = -1
Query: 610 GGGGXXPXXXXXPPXXGGFPXXXPLXXXXXXXXKKXXXPXRGXPAPXXGGXXXPPXXPXX 431
GGGG PP GG P P P +G AP PP P
Sbjct: 94 GGGGCDGCCNPGPPGPGGSP-GKPGKPGKPGAPGAPGNPGKGASAPCE-PVTQPPCQPCP 151
Query: 430 XXPPG 416
PPG
Sbjct: 152 GGPPG 156
>J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 2 (col-2) gene, complete
cds. ).
Length = 301
Score = 28.3 bits (60), Expect = 8.2
Identities = 20/65 (30%), Positives = 21/65 (32%)
Frame = -1
Query: 610 GGGGXXPXXXXXPPXXGGFPXXXPLXXXXXXXXKKXXXPXRGXPAPXXGGXXXPPXXPXX 431
GGGG PP GG P P P +G AP PP P
Sbjct: 94 GGGGCDGCCNPGPPGPGGSP-GKPGKPGKPGAPGAPGNPGKGASAPCE-PVTQPPCQPCP 151
Query: 430 XXPPG 416
PPG
Sbjct: 152 GGPPG 156
>AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen
structural gene, probabledorsal and ventral cuticle
component, from embryo to adult,but maximal in dauer
(28.0 kD) (col-2) protein.
Length = 301
Score = 28.3 bits (60), Expect = 8.2
Identities = 20/65 (30%), Positives = 21/65 (32%)
Frame = -1
Query: 610 GGGGXXPXXXXXPPXXGGFPXXXPLXXXXXXXXKKXXXPXRGXPAPXXGGXXXPPXXPXX 431
GGGG PP GG P P P +G AP PP P
Sbjct: 94 GGGGCDGCCNPGPPGPGGSP-GKPGKPGKPGAPGAPGNPGKGASAPCE-PVTQPPCQPCP 151
Query: 430 XXPPG 416
PPG
Sbjct: 152 GGPPG 156
>AF106580-3|AAC78205.1| 881|Caenorhabditis elegans Temporarily
assigned gene nameprotein 268 protein.
Length = 881
Score = 28.3 bits (60), Expect = 8.2
Identities = 12/32 (37%), Positives = 12/32 (37%)
Frame = +2
Query: 599 PPPPXGGXXXXXXXPPXXXXPXPXXXXXPPPP 694
PPPP PP P P PPPP
Sbjct: 70 PPPPPPLISILQQAPPPPPPPPPPTLKAPPPP 101
>AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical
protein D1007.7 protein.
Length = 988
Score = 28.3 bits (60), Expect = 8.2
Identities = 22/78 (28%), Positives = 23/78 (29%), Gaps = 9/78 (11%)
Frame = -3
Query: 623 PXPPXGGGGXXPKXXXPPXXXGFSXXXPPPXXXXXG---------XXKXXXPXQGXPRPX 471
P PP G G P PP GF PPP G + P P P
Sbjct: 717 PAPPPPGVGPPPPQGIPP--MGFDPNKPPPPMFQQGFNAGAPPPPFGRGAGPMSSFPPPP 774
Query: 470 XGGXXXPPXAXXXXGXPG 417
GG P G G
Sbjct: 775 RGGMHHMPPPPSFRGGRG 792
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 28.3 bits (60), Expect = 8.2
Identities = 12/32 (37%), Positives = 12/32 (37%)
Frame = +2
Query: 599 PPPPXGGXXXXXXXPPXXXXPXPXXXXXPPPP 694
PPPP PP P P PPPP
Sbjct: 562 PPPPPPLPQNLSGAPPPPPPPPPMLGGPPPPP 593
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,425,794
Number of Sequences: 27780
Number of extensions: 199420
Number of successful extensions: 1070
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 694
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2381234086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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