Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_L02
         (860 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   2.0  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   7.9  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +3

Query: 666 PPPPPXXXXXPPPPPXXXXGG 728
           PPP P     PPPPP     G
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAG 772



 Score = 26.6 bits (56), Expect = 4.5
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +3

Query: 666 PPPPPXXXXXPPPPP 710
           PPPPP      PPPP
Sbjct: 764 PPPPPGVAGAGPPPP 778



 Score = 26.6 bits (56), Expect = 4.5
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +3

Query: 666 PPPPPXXXXXPPPPP 710
           PPPP      PPPPP
Sbjct: 765 PPPPGVAGAGPPPPP 779



 Score = 26.2 bits (55), Expect = 6.0
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = +3

Query: 666 PPPPPXXXXXPPPPPXXXXGGG 731
           PP P      PPPPP    G G
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAG 774



 Score = 25.8 bits (54), Expect = 7.9
 Identities = 12/27 (44%), Positives = 12/27 (44%), Gaps = 5/27 (18%)
 Frame = +3

Query: 666 PPPPPX-----XXXXPPPPPXXXXGGG 731
           PPPPP          PPPPP     GG
Sbjct: 763 PPPPPPGVAGAGPPPPPPPPPAVSAGG 789


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 11/22 (50%), Positives = 11/22 (50%), Gaps = 2/22 (9%)
 Frame = +3

Query: 666 PPPPPXXXXXPP--PPPXXXXG 725
           PPPPP     PP  PPP    G
Sbjct: 10  PPPPPPPGFEPPSQPPPPPPPG 31


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,578,427
Number of Sequences: 5004
Number of extensions: 19286
Number of successful extensions: 98
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)