Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_K23
         (901 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    30   0.52 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   3.6  
SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|...    26   6.3  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   6.3  

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 29.9 bits (64), Expect = 0.52
 Identities = 20/49 (40%), Positives = 20/49 (40%)
 Frame = +1

Query: 625 G*XGGGPPPFXXXGGFFXXTLGXFGGVXXKPXGGGVXXPGGKXKGXGXP 771
           G  GGGP  F    G F    G FGG      GGG    GG   G G P
Sbjct: 224 GGFGGGPGGFEGGPGGFGGGPGGFGG-GLGGFGGGPGGFGGGPGGHGGP 271


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 15/51 (29%), Positives = 15/51 (29%)
 Frame = -1

Query: 799 PPKXXXGGXXXXPPLFXFPRGXXPPXPXVXXKPPQKXPVXXXKNPPXXKXG 647
           PP          PPL    R   PP P     PP   P      PP    G
Sbjct: 392 PPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMG 442


>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 927

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +2

Query: 92  KFIPVMAATLRV*LIGYVMYIEIYGRTLNSCNSTSVSNDDRMKAFTI 232
           K +PV A   R+      +YI  YG +    N   +S+DDR+K+F +
Sbjct: 837 KSMPVQAFATRISGNSIDVYISEYGIS----NRVDLSSDDRIKSFIV 879


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 14/41 (34%), Positives = 15/41 (36%)
 Frame = -1

Query: 730 PPXPXVXXKPPQKXPVXXXKNPPXXKXGGXPPXXNPXXXXG 608
           PP P V    P   P+     PP    GG PP   P    G
Sbjct: 734 PPPPAVIVPTPAPAPIPVP--PPAPIMGGPPPPPPPPGVAG 772


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,495,336
Number of Sequences: 5004
Number of extensions: 40059
Number of successful extensions: 84
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)