Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_K23
         (901 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0686 - 30900748-30902167,30903442-30904742                       33   0.31 
07_03_0560 + 19479597-19480667                                         29   5.0  
12_02_0299 - 17051570-17052474,17053542-17053755                       29   6.7  
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330...    29   6.7  
07_03_1751 - 29215074-29216270                                         29   6.7  
04_04_0198 + 23502657-23502900,23505228-23505298,23505690-235057...    29   6.7  

>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 33.1 bits (72), Expect = 0.31
 Identities = 20/57 (35%), Positives = 21/57 (36%), Gaps = 2/57 (3%)
 Frame = -1

Query: 799 PPKXXXGGXXXXPPLFXFPRGXXPPXPXVXXKPPQ--KXPVXXXKNPPXXKXGGXPP 635
           PP          PP    P+G  PP P     PP   K P      PP  K GG PP
Sbjct: 327 PPPPPPKAAPPPPP----PKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGKKGGPPP 379



 Score = 29.5 bits (63), Expect = 3.8
 Identities = 19/64 (29%), Positives = 20/64 (31%)
 Frame = -1

Query: 799 PPKXXXGGXXXXPPLFXFPRGXXPPXPXVXXKPPQKXPVXXXKNPPXXKXGGXPPXXNPX 620
           PPK         PP    P+   PP P     PP   P      PP  K    PP   P 
Sbjct: 318 PPKPAAAAPPPPPP----PKAAPPPPPPKGPPPPP--PAKGPPPPPPPKGPSPPPPPPPG 371

Query: 619 XXXG 608
              G
Sbjct: 372 GKKG 375



 Score = 28.7 bits (61), Expect = 6.7
 Identities = 20/67 (29%), Positives = 21/67 (31%), Gaps = 3/67 (4%)
 Frame = -1

Query: 799 PPKXXXGGXXXXPPLFXFPRGXXPPXPXVXXKPPQKXPVXXXKN---PPXXKXGGXPPXX 629
           PP     G    PP     +G  PP P     PP   P    K    PP  K G   P  
Sbjct: 336 PPPPPPKGPPPPPPA----KGPPPPPPPKGPSPPPPPPPGGKKGGPPPPPPKGGASRPPA 391

Query: 628 NPXXXXG 608
            P    G
Sbjct: 392 APGVPTG 398


>07_03_0560 + 19479597-19480667
          Length = 356

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 17/43 (39%), Positives = 18/43 (41%)
 Frame = +1

Query: 637 GGPPPFXXXGGFFXXTLGXFGGVXXKPXGGGVXXPGGKXKGXG 765
           GG   F   GG      G FGG      GGG+   GGK  G G
Sbjct: 68  GGDGGFGGGGGGGLGGGGGFGGGGGAGGGGGLGGGGGKGGGFG 110


>12_02_0299 - 17051570-17052474,17053542-17053755
          Length = 372

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 19/66 (28%), Positives = 21/66 (31%)
 Frame = -1

Query: 820 PWXXWXKPPKXXXGGXXXXPPLFXFPRGXXPPXPXVXXKPPQKXPVXXXKNPPXXKXGGX 641
           PW  W  PP          PP+F  P    PP P      PQ  P+      P       
Sbjct: 266 PWP-WAPPPAFPF---PHLPPIFSPPSPPPPPPPAFPFPFPQLPPLPHFPPLPSFYPSPP 321

Query: 640 PPXXNP 623
           PP   P
Sbjct: 322 PPPPPP 327


>08_01_0375 -
           3307206-3307316,3307870-3307965,3308061-3308132,
           3308247-3308315,3308427-3308513,3308753-3308858,
           3309118-3309237,3309327-3309406,3309497-3309878,
           3310746-3310814,3311460-3312202
          Length = 644

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 22/75 (29%), Positives = 25/75 (33%), Gaps = 1/75 (1%)
 Frame = -1

Query: 829 SRXPWXXWXKPPKXXXGGXXXXPPLFXFPRGXXPPX-PXVXXKPPQKXPVXXXKNPPXXK 653
           S  P+     PP+   GG    PP    P G  PP  P     PP +        PP   
Sbjct: 3   SYRPYAPHPPPPQ---GGFPPQPPPMN-PYGPPPPQQPAYGHMPPPQGAPPPFLAPPPPP 58

Query: 652 XGGXPPXXNPXXXXG 608
             G PP   P    G
Sbjct: 59  PPGPPPPHQPQFNFG 73


>07_03_1751 - 29215074-29216270
          Length = 398

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 21/66 (31%), Positives = 21/66 (31%)
 Frame = +1

Query: 625 G*XGGGPPPFXXXGGFFXXTLGXFGGVXXKPXGGGVXXPGGKXKGXGXPXAPQXXFXGAS 804
           G  GGG       GGF     G FGG      GGGV    G   G G        F G  
Sbjct: 302 GGGGGGGGGAGAGGGFGGGKGGGFGGGFGGGKGGGVGGGAGGGFGGGGGAGAGGGFGGGK 361

Query: 805 XSXXRG 822
                G
Sbjct: 362 GGGFGG 367


>04_04_0198 +
           23502657-23502900,23505228-23505298,23505690-23505727,
           23505905-23507693
          Length = 713

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 18/67 (26%), Positives = 20/67 (29%), Gaps = 3/67 (4%)
 Frame = -1

Query: 799 PPKXXXGGXXXXPPLFXFPRGXXPPXPXVXXKPPQKXPVXXXKNPPXXKXG---GXPPXX 629
           PP          PP      G  P  P +   PP   P+     PP    G     PP  
Sbjct: 625 PPPMMANAAPVPPP--SMANGAGPVPPPIAVAPPPAPPIAGAAPPPPMANGAAAAAPPGG 682

Query: 628 NPXXXXG 608
           NP    G
Sbjct: 683 NPAPPAG 689


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,900,121
Number of Sequences: 37544
Number of extensions: 378504
Number of successful extensions: 865
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 815
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2542098580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)