Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_K23
         (901 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical pr...    33   0.28 
U55366-4|AAA97982.1|  310|Caenorhabditis elegans Collagen protei...    30   2.6  

>Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical
           protein T24B8.4 protein.
          Length = 866

 Score = 33.1 bits (72), Expect = 0.28
 Identities = 22/57 (38%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
 Frame = -1

Query: 799 PPKXXXGGXXXXPPLFXFPRGXXPPXP-XVXXKPPQ-KXPVXXXKNPPXXKXGGXPP 635
           PP    GG    PP+F  P    PP    V  +PP+ K PV    NP   K GG  P
Sbjct: 96  PPPPMMGGIPPPPPMFGAPPPPPPPSGLGVAPQPPRPKTPV----NPALAKLGGKNP 148



 Score = 29.5 bits (63), Expect = 3.4
 Identities = 16/51 (31%), Positives = 19/51 (37%)
 Frame = -1

Query: 799 PPKXXXGGXXXXPPLFXFPRGXXPPXPXVXXKPPQKXPVXXXKNPPXXKXG 647
           PP    GG    PP+F    G  PP P +    P   P+     PP    G
Sbjct: 75  PPPPGPGGIPPPPPMF---AGGIPPPPPMMGGIPPPPPMFGAPPPPPPPSG 122


>U55366-4|AAA97982.1|  310|Caenorhabditis elegans Collagen protein
           139 protein.
          Length = 310

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +1

Query: 487 PXPKXPPXXXXFPRGNGXXGXGVXXPGQKXKNKXP 591
           P P+ PP     P GNG  G G   PGQ+  +  P
Sbjct: 233 PGPRGPPGQAGSPGGNGQPG-GPGQPGQRGSDGQP 266


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,978,960
Number of Sequences: 27780
Number of extensions: 307298
Number of successful extensions: 594
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 561
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2286823924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)