Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_K21
         (878 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces...    30   0.50 
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   8.1  

>SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 662

 Score = 29.9 bits (64), Expect = 0.50
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = -3

Query: 237 GRLVDFDDRERALAPAEVRFPWRAAGADGERGHREYERYHPMPHNWFY 94
           G++++ +D E  LA   +R PW +A     RGH  Y   +  P+  FY
Sbjct: 462 GKIIEGNDVEGVLA---IRSPWPSAARTVWRGHDRYIDTYLKPYPGFY 506


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 30/100 (30%), Positives = 50/100 (50%), Gaps = 2/100 (2%)
 Frame = -1

Query: 491 SVSATTISTPSLELHPSELQSSTCIWYLPPFFTLKAADVALPAPLQT--SFLSSRTLDLS 318
           S S+ + S P      S L SST     P   +  ++  +  AP  T  S+LSS ++  S
Sbjct: 160 SSSSLSSSDPLTSSTFSSLSSSTSSSQ-PSVSSTSSSTFSSAAPTSTSSSYLSSSSVVSS 218

Query: 317 AASPVHTFQLTETSAASFLVTSWL*AVAAWLTSTIANVRS 198
           ++SP  +   T TS  S L TS + + ++  +ST +++ S
Sbjct: 219 SSSPSSSSSSTLTS--SSLSTSSIPSTSSSSSSTSSSLSS 256


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,850,543
Number of Sequences: 5004
Number of extensions: 50133
Number of successful extensions: 114
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)