Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_K20
         (837 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC227.13c |isu1||mitochondrial iron-sulfur cluster assembly sc...   101   1e-22
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    29   1.1  
SPAC1687.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    28   1.4  
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ...    27   2.5  
SPBC14C8.03 |fma2||methionine aminopeptidase Fma2 |Schizosacchar...    27   3.3  
SPAC7D4.02c |||src |Schizosaccharomyces pombe|chr 1|||Manual           27   4.4  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    27   4.4  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    26   7.6  

>SPAC227.13c |isu1||mitochondrial iron-sulfur cluster assembly
           scaffold protein Isu1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 192

 Score =  101 bits (242), Expect = 1e-22
 Identities = 48/68 (70%), Positives = 56/68 (82%)
 Frame = +2

Query: 389 GAPACGDVMKLQIKVDENGKIIDAKFKTFGCGSAIASSSLATEWVKGKTVDEALKLKNTD 568
           GAPACGDVM+L I+V+++G I D KFKTFGCGSAIASSS  T  VKG T++EA K+KNT 
Sbjct: 84  GAPACGDVMRLAIRVNKDGVIEDVKFKTFGCGSAIASSSYVTTMVKGMTLEEASKIKNTQ 143

Query: 569 IAKELSLP 592
           IAKEL LP
Sbjct: 144 IAKELCLP 151



 Score = 62.5 bits (145), Expect = 7e-11
 Identities = 41/113 (36%), Positives = 54/113 (47%)
 Frame = +1

Query: 298 YHANVIDHYENPRNVGSLDKKDKNVGTGLVWCTCMWRRNEVANQSGREWKNH*CQI*NFW 477
           YH NV+DHY NPRNVG+L K D +VG GLV          +A +  ++      +   F 
Sbjct: 54  YHKNVLDHYNNPRNVGTLPKGDPDVGIGLVGAPACGDVMRLAIRVNKDGVIEDVKFKTFG 113

Query: 478 MWFSYSFKLSCH*MG*RKNS**GTKIEEHRYC*RAVLTPVKLHCSMLAEDAXK 636
              + +       M         +KI+  +      L PVKLHCSMLAEDA K
Sbjct: 114 CGSAIASSSYVTTMVKGMTLEEASKIKNTQIAKELCLPPVKLHCSMLAEDAIK 166


>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 867

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -1

Query: 579 SLAISVFFN-FSASSTVFPLTHSVARELEAIAEPHPKVLNLAS 454
           +L +S F +   A+  V P+ H V   L   A+PHP++  LAS
Sbjct: 763 TLVVSSFISHIVAAMVVLPIVHEVGSRL---ADPHPRLFVLAS 802


>SPAC1687.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 96

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = -1

Query: 630 CVFCKHRAMKLDWGKDSSLAISVFFNFSASSTVF 529
           C FC H    +   +DS   + +F  F  + T+F
Sbjct: 20  CYFCDHLLQYISNSRDSKAGLKIFLVFELAVTIF 53


>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1026

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = -1

Query: 567 SVFFNFSASSTVFPLTHSVARELEAIAEPHPKVLNLASMIFPFSSTLI 424
           SVF     ++ +F L+ S   +L    EPH ++++  S  FP+ S  I
Sbjct: 245 SVFVLADGTACIFTLSSSTLLKLHQSPEPHFELISKYSGDFPWKSCTI 292


>SPBC14C8.03 |fma2||methionine aminopeptidase Fma2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +2

Query: 407 DVMKLQIKVDENGKIIDAKF 466
           DVMK+ I V  NG+I+D+ F
Sbjct: 194 DVMKVDIGVHVNGRIVDSAF 213


>SPAC7D4.02c |||src |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 415

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -1

Query: 309 VRMIRCRKNHIRTSKAFKTH 250
           V +++C K H+  S+ F+TH
Sbjct: 64  VELMQCNKKHLEASRYFQTH 83


>SPBC211.03c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1462

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +2

Query: 446 KIIDAKFKTFGCGSAIASSSLATEWVKGKTVDEALKL 556
           K +  +F T G  S I ++ ++    KGK +DEAL+L
Sbjct: 597 KRVLGEFLTKGSNSHILNAFISAFDFKGKRIDEALRL 633


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2386

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
 Frame = +1

Query: 310 VIDHYENPRNVGSLDKKDKNVGTGLVWCTCMWRRNEVANQSGREWKNH*CQI*N-FWMWF 486
           ++D+Y +  NV   +   KN    LV CT + + NE  N   R ++ H C++ N F + F
Sbjct: 465 MLDYYSS-HNVTISEDDLKNFS--LVLCTHVAKVNEKTNSIFRTYEVHGCEVCNSFCLLF 521

Query: 487 SYS--FKLSCH 513
                FK+  H
Sbjct: 522 DERSLFKIPYH 532


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,569,301
Number of Sequences: 5004
Number of extensions: 48605
Number of successful extensions: 113
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)