Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_K20
         (837 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0152 - 27041070-27041217,27041939-27041993,27043321-27043633    115   4e-26
05_07_0155 + 28069592-28069925,28071072-28071126,28072448-28072577    111   9e-25
03_05_0679 + 26678131-26679204                                         32   0.65 
01_06_1140 - 34836967-34836996,34837107-34838771                       30   2.6  
08_02_1135 - 24590664-24591231,24591314-24591393,24591523-24591579     29   3.5  
04_04_0963 - 29743363-29744450,29744729-29745043,29745116-297454...    29   3.5  

>01_06_0152 - 27041070-27041217,27041939-27041993,27043321-27043633
          Length = 171

 Score =  115 bits (277), Expect = 4e-26
 Identities = 54/69 (78%), Positives = 63/69 (91%), Gaps = 1/69 (1%)
 Frame = +2

Query: 389 GAPACGDVMKLQIKVDEN-GKIIDAKFKTFGCGSAIASSSLATEWVKGKTVDEALKLKNT 565
           GAPACGDVMKLQI+VDE+ GKI+DA FKTFGCGSAIASSS+ATEWVKGK ++E + +KNT
Sbjct: 64  GAPACGDVMKLQIRVDESSGKIVDACFKTFGCGSAIASSSVATEWVKGKQMEEVVTIKNT 123

Query: 566 DIAKELSLP 592
           +IAK LSLP
Sbjct: 124 EIAKHLSLP 132



 Score = 54.4 bits (125), Expect = 1e-07
 Identities = 28/55 (50%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
 Frame = +1

Query: 226 LINGIRRCMCLKGFGSPNVILAAP-YHANVIDHYENPRNVGSLDKKDKNVGTGLV 387
           L  G+RR +   G  +P  +  A  YH  V+DHYENPRNVGS +  D +VGTGLV
Sbjct: 10  LAPGLRRVLG-GGAAAPVAVGGAKAYHERVVDHYENPRNVGSFENDDPSVGTGLV 63



 Score = 34.7 bits (76), Expect = 0.092
 Identities = 15/17 (88%), Positives = 15/17 (88%)
 Frame = +1

Query: 586 LTPVKLHCSMLAEDAXK 636
           L PVKLHCSMLAEDA K
Sbjct: 131 LPPVKLHCSMLAEDAIK 147


>05_07_0155 + 28069592-28069925,28071072-28071126,28072448-28072577
          Length = 172

 Score =  111 bits (266), Expect = 9e-25
 Identities = 51/69 (73%), Positives = 63/69 (91%), Gaps = 1/69 (1%)
 Frame = +2

Query: 389 GAPACGDVMKLQIKVDE-NGKIIDAKFKTFGCGSAIASSSLATEWVKGKTVDEALKLKNT 565
           GAPACGDVMKLQI+VDE +G+I+DA FKTFGCGSAIASSS+A+EWVKGK +++A  +KN+
Sbjct: 71  GAPACGDVMKLQIRVDEESGRIVDACFKTFGCGSAIASSSVASEWVKGKQMEDAASIKNS 130

Query: 566 DIAKELSLP 592
           +IAK LSLP
Sbjct: 131 EIAKHLSLP 139



 Score = 61.3 bits (142), Expect = 9e-10
 Identities = 47/123 (38%), Positives = 57/123 (46%), Gaps = 4/123 (3%)
 Frame = +1

Query: 280 VILAAPYHANVIDHYENPRNVGSLDKKDKNVGTGLVWC-TC---MWRRNEVANQSGREWK 447
           V+    YH  V+DHY+NPRNVG+ DK D +VGTGLV    C   M  +  V  +SGR   
Sbjct: 35  VVRRRGYHERVVDHYDNPRNVGTFDKDDPDVGTGLVGAPACGDVMKLQIRVDEESGRIVD 94

Query: 448 NH*CQI*NFWMWFSYSFKLSCH*MG*RKNS**GTKIEEHRYC*RAVLTPVKLHCSMLAED 627
              C    F    + +           K       I+         L PVKLHCSMLAED
Sbjct: 95  A--C-FKTFGCGSAIASSSVASEWVKGKQMEDAASIKNSEIAKHLSLPPVKLHCSMLAED 151

Query: 628 AXK 636
           A K
Sbjct: 152 AIK 154


>03_05_0679 + 26678131-26679204
          Length = 357

 Score = 31.9 bits (69), Expect = 0.65
 Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
 Frame = -1

Query: 588 KDSSLAISVFFNFSASSTVFPLTHSVAREL-EAIAEPHPKVLNLASMIFPFSSTLICNFI 412
           + +S   SV F+F ASS+  P   +  REL + +    P   +LA  ++PF  + +   I
Sbjct: 86  RHASCPESVHFHFLASSSSSPEAAAAVRELRDTVRASFP---SLAFRVYPFDESRVAGLI 142

Query: 411 TSPHAGAPNEACTYIFIFL 355
           ++   GA +    Y   +L
Sbjct: 143 STSIRGALDRPLNYARSYL 161


>01_06_1140 - 34836967-34836996,34837107-34838771
          Length = 564

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 14/54 (25%), Positives = 26/54 (48%)
 Frame = +2

Query: 395 PACGDVMKLQIKVDENGKIIDAKFKTFGCGSAIASSSLATEWVKGKTVDEALKL 556
           PAC     LQ+  + +G I+ +     G   + A ++L   + K   +DEA ++
Sbjct: 314 PACAQTAALQVGREVHGYIVTSGLACHGALDSFACNALVDMYAKSGALDEARRI 367


>08_02_1135 - 24590664-24591231,24591314-24591393,24591523-24591579
          Length = 234

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -1

Query: 591 GKDSSLAISVFFNFSASSTVFPLTHSVARELEAIAEPHPK 472
           G ++ L       +   +TV+P  H   REL  I + HPK
Sbjct: 7   GSNTLLKSDSILEYVLDTTVYPREHERLRELRLITQNHPK 46


>04_04_0963 -
           29743363-29744450,29744729-29745043,29745116-29745477,
           29745947-29746013,29746111-29746954
          Length = 891

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 5/70 (7%)
 Frame = +2

Query: 374 VQASFGAPACGDVMKLQIKVDENGKIIDAKFKTFGCGSAIASSSLATE-----WVKGKTV 538
           ++++F A     ++ +      +GK I A  +   CG      SLA E     W     +
Sbjct: 433 IESNFTAKQLNKIILVSYGFKNSGKSISAALENRSCGFTGIKGSLALERDRFLWASINYI 492

Query: 539 DEALKLKNTD 568
           DE + L+N D
Sbjct: 493 DEVIVLENFD 502


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,761,900
Number of Sequences: 37544
Number of extensions: 287898
Number of successful extensions: 647
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 645
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2315199948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)