Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_K20
         (837 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021492-2|CAA16379.1|  153|Caenorhabditis elegans Hypothetical ...   124   1e-28

>AL021492-2|CAA16379.1|  153|Caenorhabditis elegans Hypothetical
           protein Y45F10D.4 protein.
          Length = 153

 Score =  124 bits (298), Expect = 1e-28
 Identities = 56/68 (82%), Positives = 63/68 (92%)
 Frame = +2

Query: 389 GAPACGDVMKLQIKVDENGKIIDAKFKTFGCGSAIASSSLATEWVKGKTVDEALKLKNTD 568
           GAPACGDVMKLQI+VD+NGKII+AKFKTFGCGSAIASSSLATEW+ GKT+D A K+KN +
Sbjct: 57  GAPACGDVMKLQIRVDDNGKIIEAKFKTFGCGSAIASSSLATEWINGKTIDYASKIKNDE 116

Query: 569 IAKELSLP 592
           IAKEL LP
Sbjct: 117 IAKELCLP 124



 Score = 68.5 bits (160), Expect = 5e-12
 Identities = 48/126 (38%), Positives = 60/126 (47%), Gaps = 1/126 (0%)
 Frame = +1

Query: 256 LKGFGSPNVILAAPYHANVIDHYENPRNVGSLDKKDKNVGTGLVWCTCMWRRNEVANQSG 435
           L  F  P     A YH  VIDHYENPRNVGSLDK D +VGTG+V         ++  +  
Sbjct: 13  LHKFALPAATSVAQYHEKVIDHYENPRNVGSLDKNDPSVGTGIVGAPACGDVMKLQIRVD 72

Query: 436 REWKNH*CQI*NFWMWFSY-SFKLSCH*MG*RKNS**GTKIEEHRYC*RAVLTPVKLHCS 612
              K    +   F    +  S  L+   +   K     +KI+         L PVKLHCS
Sbjct: 73  DNGKIIEAKFKTFGCGSAIASSSLATEWIN-GKTIDYASKIKNDEIAKELCLPPVKLHCS 131

Query: 613 MLAEDA 630
           MLA+DA
Sbjct: 132 MLAQDA 137


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,189,422
Number of Sequences: 27780
Number of extensions: 272323
Number of successful extensions: 595
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 595
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2066533546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)