Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP24_F_K17
(894 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein Rad4|Schizosac... 27 3.6
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 27 3.6
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 26 6.3
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 26 8.3
SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual 26 8.3
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc... 26 8.3
>SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein
Rad4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 648
Score = 27.1 bits (57), Expect = 3.6
Identities = 17/56 (30%), Positives = 26/56 (46%)
Frame = +2
Query: 668 RPCRLPDTCPPFSLREAWRFLIAHAVXISVRCRSFAPSWAVCTNPPFSPTAAPYXV 835
R L +T PFS++ RF I HA +VR A W + + F +P+ +
Sbjct: 434 RSILLVNTNEPFSMKT--RFKIQHATEWNVRVVGVAWLWNIIQSGKFIDQVSPWAI 487
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 27.1 bits (57), Expect = 3.6
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +2
Query: 773 APSWAVCTNPPFSPTAAPYXVLSSGVHPVXTXYRPGS 883
+PS++ T+P +SPT+ Y S P Y P S
Sbjct: 1589 SPSYSP-TSPSYSPTSPSYSATSPSYSPTSPSYSPTS 1624
Score = 27.1 bits (57), Expect = 3.6
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +2
Query: 773 APSWAVCTNPPFSPTAAPYXVLSSGVHPVXTXYRPGS 883
+PS++ T+P +SPT+ Y S P Y P S
Sbjct: 1603 SPSYSA-TSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1638
Score = 26.2 bits (55), Expect = 6.3
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +2
Query: 773 APSWAVCTNPPFSPTAAPYXVLSSGVHPVXTXYRPGS 883
+PS++ T+P +SPT+ Y S P Y P S
Sbjct: 1610 SPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1645
Score = 26.2 bits (55), Expect = 6.3
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +2
Query: 773 APSWAVCTNPPFSPTAAPYXVLSSGVHPVXTXYRPGS 883
+PS++ T+P +SPT+ Y S P Y P S
Sbjct: 1617 SPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1652
Score = 26.2 bits (55), Expect = 6.3
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +2
Query: 773 APSWAVCTNPPFSPTAAPYXVLSSGVHPVXTXYRPGS 883
+PS++ T+P +SPT+ Y S P Y P S
Sbjct: 1624 SPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1659
Score = 26.2 bits (55), Expect = 6.3
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +2
Query: 773 APSWAVCTNPPFSPTAAPYXVLSSGVHPVXTXYRPGS 883
+PS++ T+P +SPT+ Y S P Y P S
Sbjct: 1631 SPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1666
Score = 26.2 bits (55), Expect = 6.3
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +2
Query: 773 APSWAVCTNPPFSPTAAPYXVLSSGVHPVXTXYRPGS 883
+PS++ T+P +SPT+ Y S P Y P S
Sbjct: 1638 SPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1673
Score = 26.2 bits (55), Expect = 6.3
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +2
Query: 773 APSWAVCTNPPFSPTAAPYXVLSSGVHPVXTXYRPGS 883
+PS++ T+P +SPT+ Y S P Y P S
Sbjct: 1645 SPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1680
Score = 26.2 bits (55), Expect = 6.3
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +2
Query: 773 APSWAVCTNPPFSPTAAPYXVLSSGVHPVXTXYRPGS 883
+PS++ T+P +SPT+ Y S P Y P S
Sbjct: 1652 SPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1687
Score = 26.2 bits (55), Expect = 6.3
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +2
Query: 773 APSWAVCTNPPFSPTAAPYXVLSSGVHPVXTXYRPGS 883
+PS++ T+P +SPT+ Y S P Y P S
Sbjct: 1659 SPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1694
Score = 26.2 bits (55), Expect = 6.3
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +2
Query: 773 APSWAVCTNPPFSPTAAPYXVLSSGVHPVXTXYRPGS 883
+PS++ T+P +SPT+ Y S P Y P S
Sbjct: 1666 SPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1701
Score = 26.2 bits (55), Expect = 6.3
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +2
Query: 773 APSWAVCTNPPFSPTAAPYXVLSSGVHPVXTXYRPGS 883
+PS++ T+P +SPT+ Y S P Y P S
Sbjct: 1673 SPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1708
Score = 26.2 bits (55), Expect = 6.3
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +2
Query: 773 APSWAVCTNPPFSPTAAPYXVLSSGVHPVXTXYRPGS 883
+PS++ T+P +SPT+ Y S P Y P S
Sbjct: 1680 SPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1715
Score = 26.2 bits (55), Expect = 6.3
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +2
Query: 773 APSWAVCTNPPFSPTAAPYXVLSSGVHPVXTXYRPGS 883
+PS++ T+P +SPT+ Y S P Y P S
Sbjct: 1687 SPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1722
Score = 26.2 bits (55), Expect = 6.3
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +2
Query: 773 APSWAVCTNPPFSPTAAPYXVLSSGVHPVXTXYRPGS 883
+PS++ T+P +SPT+ Y S P Y P S
Sbjct: 1694 SPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1729
Score = 26.2 bits (55), Expect = 6.3
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +2
Query: 773 APSWAVCTNPPFSPTAAPYXVLSSGVHPVXTXYRPGS 883
+PS++ T+P +SPT+ Y S P Y P S
Sbjct: 1701 SPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1736
Score = 26.2 bits (55), Expect = 6.3
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +2
Query: 773 APSWAVCTNPPFSPTAAPYXVLSSGVHPVXTXYRPGS 883
+PS++ T+P +SPT+ Y S P Y P S
Sbjct: 1708 SPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1743
Score = 26.2 bits (55), Expect = 6.3
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +2
Query: 773 APSWAVCTNPPFSPTAAPYXVLSSGVHPVXTXYRPGS 883
+PS++ T+P +SPT+ Y S P Y P S
Sbjct: 1715 SPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1750
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 26.2 bits (55), Expect = 6.3
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Frame = -1
Query: 723 RHASRREKGGQV---SGKRQGRNRRAHEGASR 637
+ RRE+GG+V SG+ + R+ HE SR
Sbjct: 95 KRGGRRERGGRVHGDSGRLRSRSPSPHEARSR 126
>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 513
Score = 25.8 bits (54), Expect = 8.3
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = +2
Query: 776 PSWAVCTNPPFSPTAAPYXVLSSGVHPVXTXYRPGSXT 889
PS+A T P F T +P + SS P RP T
Sbjct: 216 PSYAASTQPEFQQTTSP--IFSSSSTPPPPPPRPSQPT 251
>SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 684
Score = 25.8 bits (54), Expect = 8.3
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +2
Query: 104 SRHDNDTLMSLDKPQLECSEKNALFVKF 187
SR+DND+ DK +E S KN +++F
Sbjct: 77 SRNDNDSEGIRDKGGVEISNKNDPYIQF 104
>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 934
Score = 25.8 bits (54), Expect = 8.3
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Frame = +1
Query: 562 EHHKNRRSSQRWRNPTGL*RYQAF----PPGSSLVRSPVPTLPLTGY 690
++HKNR+S+ P GL Y+A PPG + L GY
Sbjct: 389 DYHKNRKSNFNKPGPDGLGLYKAVLLSGPPGIGKTTAAHLVAKLEGY 435
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,353,640
Number of Sequences: 5004
Number of extensions: 66750
Number of successful extensions: 206
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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