Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_K15
         (925 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    29   0.93 
SPBC2D10.09 |||3-hydroxyisobutyryl-CoA hydrolase|Schizosaccharom...    27   3.7  

>SPBC354.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 163

 Score = 29.1 bits (62), Expect = 0.93
 Identities = 15/30 (50%), Positives = 17/30 (56%)
 Frame = +1

Query: 133 NLFFIYLRPSRCRTPLDRPMKFPYTFSAKV 222
           NL F+YL      TPL  PM  PY F+ KV
Sbjct: 91  NLMFVYLV---ILTPLPHPMLIPYLFAPKV 117


>SPBC2D10.09 |||3-hydroxyisobutyryl-CoA
           hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 429

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +1

Query: 85  HLRKLENGYLKLLSVFNLFFIYLRPSRCRTPLDRPMKFPY 204
           H + LEN Y KL S +N    +    R +TPL     +PY
Sbjct: 390 HFKDLEN-YFKLPSEYNNGISFAAKGRRKTPLWNYKTYPY 428


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,971,788
Number of Sequences: 5004
Number of extensions: 53878
Number of successful extensions: 128
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 467341524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)