Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_K14
         (867 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0657 + 19271266-19271388,19271906-19271910,19272005-192720...   203   2e-52
03_01_0485 + 3695857-3695951,3696489-3696597,3696746-3696886,369...   145   4e-35
07_01_0587 - 4362843-4362977,4363072-4363131,4363228-4363305,436...    30   2.8  
03_06_0302 - 32981404-32981538,32981619-32981678,32981800-329818...    29   4.8  
05_01_0030 + 195663-196691                                             29   6.4  

>09_04_0657 +
           19271266-19271388,19271906-19271910,19272005-19272067,
           19272150-19272256,19272321-19272418,19273070-19273162,
           19273279-19273320,19273464-19273619
          Length = 228

 Score =  203 bits (495), Expect = 2e-52
 Identities = 98/196 (50%), Positives = 138/196 (70%), Gaps = 4/196 (2%)
 Frame = +1

Query: 157 ALIGPSILNADLSQLYEESQKLLDNGADYLHLDVMDGQFVPNLTFGHPVVKCLRGKIKDA 336
           A I PS+L++D + L  E+ +++  GAD+LH+D+MDG FVPNLT G PV++ LR   K A
Sbjct: 7   AKIAPSMLSSDFANLAAEADRMVRLGADWLHMDIMDGHFVPNLTIGAPVIQSLRKHTK-A 65

Query: 337 FFETHMMVEKPEQWITPMADAGVNQYTFHIEPVKDVI-EVCRKVREHGMKVGVAIKPGTP 513
           + + H+MV  P  ++ P+A AG + +TFHIE  +D   E+ + ++  GM+ GV+++PGTP
Sbjct: 66  YLDCHLMVTNPSDYVEPLAKAGASGFTFHIEVSRDNWQELIQSIKAKGMRPGVSLRPGTP 125

Query: 514 VSEVEKYISIS---DMVLIMTVEPGFGGQKFMENQMAKVQYLRENYPLLDIEVXGGVGPS 684
           V EV   +      ++VL+MTVEPGFGGQKFM   M KV+ LR+ YP LDIEV GG+GPS
Sbjct: 126 VEEVFPLVEAENPVELVLVMTVEPGFGGQKFMPEMMEKVRALRKKYPSLDIEVDGGLGPS 185

Query: 685 TINCCANAGANMIVSG 732
           TI+  A+AGAN IV+G
Sbjct: 186 TIDVAASAGANCIVAG 201


>03_01_0485 +
           3695857-3695951,3696489-3696597,3696746-3696886,
           3696986-3697099,3697558-3697636,3698163-3698272,
           3698344-3698400,3698520-3698609
          Length = 264

 Score =  145 bits (352), Expect = 4e-35
 Identities = 81/216 (37%), Positives = 122/216 (56%), Gaps = 6/216 (2%)
 Frame = +1

Query: 103 KFFRRKIRSKTKMTRHLKALIGPSILNADLSQLYEESQKLLDNGADYLHLDVMDGQFVPN 282
           K FR +  S+         ++ PSIL+A+ S+L E+ + +   G D++H+DVMDG+FVPN
Sbjct: 33  KAFRVRASSRVDKFSKNDIIVSPSILSANFSKLGEQVKAVEVAGCDWIHVDVMDGRFVPN 92

Query: 283 LTFGHPVVKCLRGKIKDAFFETHMMVEKPEQWITPMADAGVNQYTFHIEPVKDVI--EVC 456
           +T G  VV  LR  + D   + H+M+ +PEQ +     AG +  + H E    +      
Sbjct: 93  ITIGPLVVDALR-PVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTV 151

Query: 457 RKVREHGMKVGVAIKPGTPVSEVEKYISISDMVLIMTVEPGFGGQKFMENQMAKVQYLR- 633
            +++  G K GV + P TP++ ++  + + D+VLIM+V PGFGGQ F+E+Q+ K+  LR 
Sbjct: 152 NQIKSLGAKAGVVLNPATPLTAIDYVLDVVDLVLIMSVNPGFGGQSFIESQVKKIAELRR 211

Query: 634 ---ENYPLLDIEVXGGVGPSTINCCANAGANMIVSG 732
              E      IEV GGVGP        AGAN IV+G
Sbjct: 212 LCAEKGVNPWIEVDGGVGPKNAYKVIEAGANAIVAG 247


>07_01_0587 -
           4362843-4362977,4363072-4363131,4363228-4363305,
           4363552-4363629,4363950-4364026,4364416-4364590,
           4364698-4364844,4365477-4365716
          Length = 329

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 28/123 (22%), Positives = 56/123 (45%), Gaps = 4/123 (3%)
 Frame = +1

Query: 376 WITPMADAGVNQYTFHIEPVKDVIEVCRKVREHGMKVGVAIKPGTPVSEVEKYISISDMV 555
           ++T + +AGV+       P+++   +  +  ++ +++ +   P TP   +EK    S+  
Sbjct: 177 FMTVVKEAGVHGLVVPDVPLEETNILRSEAAKNNLELVLLTTPTTPTERMEKITKASEGF 236

Query: 556 LIMTVEPGFGGQKFMENQMAKVQYLRENY-PLLDIEVXGGVGPST---INCCANAGANMI 723
           + +    G  G +   N   KVQ L ++   + D  V  G G ST   +   A  GA+ +
Sbjct: 237 IYLVSTVGVTGAR--ANVSGKVQSLLQDIKQVTDKAVAVGFGISTPEHVKQIAGWGADGV 294

Query: 724 VSG 732
           + G
Sbjct: 295 IIG 297


>03_06_0302 -
           32981404-32981538,32981619-32981678,32981800-32981877,
           32982264-32982341,32982516-32982592,32983271-32983445,
           32983532-32983678,32984407-32984496
          Length = 279

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 27/116 (23%), Positives = 52/116 (44%), Gaps = 4/116 (3%)
 Frame = +1

Query: 397 AGVNQYTFHIEPVKDVIEVCRKVREHGMKVGVAIKPGTPVSEVEKYISISDMVLIMTVEP 576
           AGV+       P+++   +  +   HG+++ +   P TP   +++    S+  + +    
Sbjct: 134 AGVHGLVVPDLPLEETALLRNEAVMHGIELVLLTTPTTPTERMKEIAKASEGFIYLVSSV 193

Query: 577 GFGGQKFMENQMAKVQY-LRENYPLLDIEVXGGVGPST---INCCANAGANMIVSG 732
           G  G +   N   +V+Y L+E   + D  V  G G ST   +   A  GA+ ++ G
Sbjct: 194 GVTGAR--SNVNLRVEYLLQEIKKVTDKPVAVGFGISTPEHVKQIAGWGADGVIIG 247


>05_01_0030 + 195663-196691
          Length = 342

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 19/54 (35%), Positives = 26/54 (48%)
 Frame = -2

Query: 584 PNPGSTVIIKTMSDIEIYFSTSETGVPGFIATPTFIPCSLTFLHTSITSLTGSI 423
           P P S   +  ++ + I ++     VP F+A  T    SLT L  S  SLTG I
Sbjct: 118 PIPDSLAALTDLTHLTISWTAVSGPVPSFLANLT----SLTMLDLSFNSLTGLI 167


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,072,358
Number of Sequences: 37544
Number of extensions: 391324
Number of successful extensions: 820
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 797
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 814
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2432722788
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)