Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_K11
         (888 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr...    30   0.38 
SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual    28   1.5  
SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subuni...    28   2.0  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    27   2.7  
SPAC1687.04 |||conserved eukaryotic protein|Schizosaccharomyces ...    27   4.7  
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr...    26   8.2  

>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1516

 Score = 30.3 bits (65), Expect = 0.38
 Identities = 22/75 (29%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
 Frame = +1

Query: 598  FEVFNTTTNEVKVKSGKYRDTAHVLENEKINYSENLISGQR---QTLVVVSMPGLNDWVQ 768
            FE+     N  + ++ K+R+    LE+   NY+E  ++ +R   QT V++S    +  ++
Sbjct: 933  FEISKQLDNSEQ-ENNKFRERIAELESHLSNYAEAKLAQERELEQTRVLISDQSQDGELK 991

Query: 769  Q-LEDKQNYLKHLEE 810
            + LE+K+N L  +EE
Sbjct: 992  ELLEEKENALIMMEE 1006


>SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 304

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 14/61 (22%), Positives = 31/61 (50%)
 Frame = +1

Query: 388 ENIMSDIETTTPDRWIENEKIMKSKLMKLPNWYQIPLINSNASHNLSDGNLVRFRGMIQD 567
           ENI + + T  P ++  ++  +K  +  LP++Y + +   +  H   DG+ V    ++ D
Sbjct: 209 ENIRNKVLTEVPKQFSVDKNQLKMFVHYLPSYYHLHVHILHVDHETGDGSAVGRAILLDD 268

Query: 568 M 570
           +
Sbjct: 269 V 269


>SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subunit
           Tim50 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 13/43 (30%), Positives = 25/43 (58%)
 Frame = +1

Query: 631 KVKSGKYRDTAHVLENEKINYSENLISGQRQTLVVVSMPGLND 759
           K +S + +DT+ + EN K     +  S  +++L ++ + GLND
Sbjct: 31  KSQSQEEKDTSKITENAKEEVKRDTSSLAKESLKLLDLNGLND 73


>SPAC29B12.07 |sec16||multidomain vesicle coat component
           Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 613 TTTNEVKVKSGKYRDTAHVLENEKINYSE 699
           TT N   +K+   R+T +  + + INYSE
Sbjct: 850 TTPNAYNIKNSNQRETKYPYQPQAINYSE 878


>SPAC1687.04 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 501

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 23/112 (20%), Positives = 51/112 (45%), Gaps = 3/112 (2%)
 Frame = +1

Query: 424 DRWIENEKIMKSKLMKLPNWYQIPLINSNASHNLSDGNLVRFRGMIQDMHNPEFYFEKFE 603
           D  + N    + ++ K+PN+             L  G L+R +GM+QD +    +F    
Sbjct: 39  DEEVSNIFATEERIRKIPNYLDCKW------SELKTGQLLRLQGMVQDTNFGHEFF---- 88

Query: 604 VFNTTTNEVKVKSGKYRDTAHVLE--NEKINYSEN-LISGQRQTLVVVSMPG 750
                   V+V    +R   ++L+   ++++  E+ ++  +R +L + ++PG
Sbjct: 89  -----AGAVEVNENIWRGCRYILDFSEDEMHLDESKIVLDERYSLFLTNVPG 135


>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 872

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 31/131 (23%), Positives = 57/131 (43%), Gaps = 1/131 (0%)
 Frame = +1

Query: 433 IENEKIMKSKLMKLPNWYQIPL-INSNASHNLSDGNLVRFRGMIQDMHNPEFYFEKFEVF 609
           +EN  + K+ L +     +  L +   A  ++S+        +++ +   E   +K+EV 
Sbjct: 141 LENTNVCKASLYRFMLMCKNELGLTDAALFSISEIYKPSTAPLVRALQTIELLLKKYEVS 200

Query: 610 NTTTNEVKVKSGKYRDTAHVLENEKINYSENLISGQRQTLVVVSMPGLNDWVQQLEDKQN 789
           NTT    K  S     T   +    +N   +LI+  R+    +    L  ++Q LE   N
Sbjct: 201 NTT----KSSSTPSPSTDDNVPTGTLN---SLIASGRRVTAELYETELK-YIQDLEYLSN 252

Query: 790 YLKHLEEPQIL 822
           Y+  L++ QIL
Sbjct: 253 YMVILQQKQIL 263


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,207,345
Number of Sequences: 5004
Number of extensions: 61753
Number of successful extensions: 147
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)