Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP24_F_K09
(889 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL022716-5|CAB97232.1| 291|Caenorhabditis elegans Hypothetical ... 33 0.36
Z68215-7|CAA92453.1| 289|Caenorhabditis elegans Hypothetical pr... 32 0.63
U41011-8|AAA82291.2| 321|Caenorhabditis elegans Collagen protei... 32 0.63
AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical... 32 0.63
Z81479-3|CAB03942.1| 283|Caenorhabditis elegans Hypothetical pr... 31 1.5
Z81479-2|CAB03941.1| 283|Caenorhabditis elegans Hypothetical pr... 31 1.5
Z79596-1|CAB01857.1| 830|Caenorhabditis elegans Hypothetical pr... 31 1.5
Z35719-1|CAA84800.1| 296|Caenorhabditis elegans Hypothetical pr... 31 1.5
V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein ( Caeno... 31 1.5
L29031-1|AAB72228.2| 830|Caenorhabditis elegans dynamin protein. 31 1.5
J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein ( C.ele... 31 1.5
Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical pr... 30 1.9
U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protei... 30 1.9
AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen prot... 30 1.9
Z79596-2|CAC42251.1| 838|Caenorhabditis elegans Hypothetical pr... 30 2.5
Z67990-1|CAA91932.1| 316|Caenorhabditis elegans Hypothetical pr... 30 2.5
X64435-1|CAA45773.1| 318|Caenorhabditis elegans collagen protein. 30 2.5
U41624-3|AAF99944.1| 318|Caenorhabditis elegans Dumpy : shorter... 30 2.5
AF167982-1|AAD50438.1| 838|Caenorhabditis elegans dynamin protein. 30 2.5
U41624-5|AAF99941.1| 314|Caenorhabditis elegans Collagen protei... 29 3.4
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 29 3.4
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 29 3.4
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 29 3.4
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 29 4.4
U53333-6|AAA96159.2| 304|Caenorhabditis elegans Collagen protei... 29 4.4
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 29 4.4
AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen prot... 29 4.4
Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical pr... 29 5.9
V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein ( Caeno... 29 5.9
J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.ele... 29 5.9
AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen stru... 29 5.9
AL132952-24|CAB61143.2| 351|Caenorhabditis elegans Hypothetical... 29 5.9
U58736-1|AAB00598.1| 302|Caenorhabditis elegans Dumpy : shorter... 28 7.8
U23172-13|ABH03527.1| 282|Caenorhabditis elegans Hypothetical p... 28 7.8
U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical p... 28 7.8
>AL022716-5|CAB97232.1| 291|Caenorhabditis elegans Hypothetical
protein C24F3.6 protein.
Length = 291
Score = 32.7 bits (71), Expect = 0.36
Identities = 24/84 (28%), Positives = 27/84 (32%)
Frame = +3
Query: 603 GKRGXXGXXGXPFPXXPXPXKTPXXPPGXFXGXGXSGXSPPPXXGGGKXGXFPXXXXGGX 782
GK G G G P P + PP G G + PP G K P G
Sbjct: 110 GKPGAPGLNGNPGRPPKEPCEPLTPPPCKPCPEGPPGPAGPPGPDGNKGPLGPPGPPGPE 169
Query: 783 XPXGXKKXFXXXXGPPXKGAXKTP 854
P G + GPP G P
Sbjct: 170 GPNG-EPGNKGPAGPPGPGGKPGP 192
>Z68215-7|CAA92453.1| 289|Caenorhabditis elegans Hypothetical
protein C53B4.5 protein.
Length = 289
Score = 31.9 bits (69), Expect = 0.63
Identities = 24/84 (28%), Positives = 26/84 (30%)
Frame = +3
Query: 603 GKRGXXGXXGXPFPXXPXPXKTPXXPPGXFXGXGXSGXSPPPXXGGGKXGXFPXXXXGGX 782
GK G G G P P + PP G G + PP G K P G
Sbjct: 108 GKPGAPGLNGNPGRPPKEPCEPITPPPCKPCPEGPPGPAGPPGPQGNKGPLGPPGPPGPE 167
Query: 783 XPXGXKKXFXXXXGPPXKGAXKTP 854
P G GPP G P
Sbjct: 168 GPNGTAGN-KGPAGPPGPGGKPGP 190
Score = 28.3 bits (60), Expect = 7.8
Identities = 25/97 (25%), Positives = 28/97 (28%), Gaps = 8/97 (8%)
Frame = +3
Query: 600 RGKRGXXGXXGXPFPXXPXPXKTPXXPPGXFXGXGXSGXSPPPXXGGGKXGXFP------ 761
+G +G G G P P P P G G G + PP G P
Sbjct: 152 QGNKGPLGPPGPPGPEGPNGTAGNKGPAGPPGPGGKPGPAGPPGENGRNGEPQPGSPGEP 211
Query: 762 --XXXXGGXXPXGXKKXFXXXXGPPXKGAXKTPXXKG 866
G P G GP KGA P G
Sbjct: 212 GRPGQPGSRGPAGQPGKDGAQGGPGEKGANGEPGQPG 248
>U41011-8|AAA82291.2| 321|Caenorhabditis elegans Collagen protein
114 protein.
Length = 321
Score = 31.9 bits (69), Expect = 0.63
Identities = 19/64 (29%), Positives = 20/64 (31%)
Frame = +3
Query: 603 GKRGXXGXXGXPFPXXPXPXKTPXXPPGXFXGXGXSGXSPPPXXGGGKXGXFPXXXXGGX 782
G G G G P P P P PG G +G PP G P GG
Sbjct: 238 GDPGPPGDSGIPGPPGPPGMAGPDGIPGMGGAKGQNGPDGPPGASGESGPNGPPGSGGGA 297
Query: 783 XPXG 794
G
Sbjct: 298 GEKG 301
>AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical
protein D1007.7 protein.
Length = 988
Score = 31.9 bits (69), Expect = 0.63
Identities = 20/68 (29%), Positives = 24/68 (35%), Gaps = 1/68 (1%)
Frame = -1
Query: 799 FXPXGXXPPXXXXGKXPIXPPPXXGGGEXPLXPXPXXXPGGXXGVXXGXG-KXGKGXPXK 623
F P PP G PPP G G P+ P GG + + G+G
Sbjct: 737 FDPNKPPPPMFQQGFNAGAPPPPFGRGAGPMSSFPPPPRGGMHHMPPPPSFRGGRGGHGG 796
Query: 622 PKXPLFPR 599
P P F R
Sbjct: 797 PPPPHFDR 804
>Z81479-3|CAB03942.1| 283|Caenorhabditis elegans Hypothetical
protein C34F6.3 protein.
Length = 283
Score = 30.7 bits (66), Expect = 1.5
Identities = 21/70 (30%), Positives = 22/70 (31%)
Frame = -2
Query: 741 PPLXGGGXKXRXPPXPXXXPGXXXGFXXXGXXRERGXPXNXXPPFSPGGVGRVXLXXXXN 562
PP GG + PP P PG G G RG P PP G G
Sbjct: 143 PPGAVGGPGPKGPPGPPGGPGELGG---PGRGGNRGPPGPRGPPGEAGPDGEGGRPGQAG 199
Query: 561 XPXPXPXXPG 532
P PG
Sbjct: 200 QTRSAPSPPG 209
>Z81479-2|CAB03941.1| 283|Caenorhabditis elegans Hypothetical
protein C34F6.2 protein.
Length = 283
Score = 30.7 bits (66), Expect = 1.5
Identities = 21/70 (30%), Positives = 22/70 (31%)
Frame = -2
Query: 741 PPLXGGGXKXRXPPXPXXXPGXXXGFXXXGXXRERGXPXNXXPPFSPGGVGRVXLXXXXN 562
PP GG + PP P PG G G RG P PP G G
Sbjct: 143 PPGAVGGPGPKGPPGPPGGPGELGG---PGRGGNRGPPGPRGPPGEAGPDGEGGRPGQAG 199
Query: 561 XPXPXPXXPG 532
P PG
Sbjct: 200 QTRSAPSPPG 209
>Z79596-1|CAB01857.1| 830|Caenorhabditis elegans Hypothetical
protein C02C6.1a protein.
Length = 830
Score = 30.7 bits (66), Expect = 1.5
Identities = 16/53 (30%), Positives = 18/53 (33%)
Frame = +3
Query: 636 PFPXXPXPXKTPXXPPGXFXGXGXSGXSPPPXXGGGKXGXFPXXXXGGXXPXG 794
P P P + P P G G PPP GG G +P P G
Sbjct: 769 PAPAPPGGRQAPMPPRGGPGAPPPPGMRPPPGAPGGGGGMYPPLIPTRPGPGG 821
>Z35719-1|CAA84800.1| 296|Caenorhabditis elegans Hypothetical
protein F17C8.2 protein.
Length = 296
Score = 30.7 bits (66), Expect = 1.5
Identities = 19/50 (38%), Positives = 21/50 (42%)
Frame = +3
Query: 603 GKRGXXGXXGXPFPXXPXPXKTPXXPPGXFXGXGXSGXSPPPXXGGGKXG 752
GK G G G P P P P PPG G G G +P P G+ G
Sbjct: 207 GKDGEKGK-GEPGPAGPPGPPGPGGPPGDAGGAGSDG-APGPQGPPGQDG 254
>V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-1 coding for a collagen.
).
Length = 296
Score = 30.7 bits (66), Expect = 1.5
Identities = 20/55 (36%), Positives = 21/55 (38%), Gaps = 2/55 (3%)
Frame = +3
Query: 603 GKRGXXGXXGXPFPXXPXPXKTPXXPPGXFXGXGXSGXSPPPXXGG--GKXGXFP 761
G G G G P P P P PPG G SG PP G G+ G P
Sbjct: 228 GPPGAPGNDGPPGPPGPKGAPGPDGPPG---ADGQSGPPGPPGPAGTPGEKGICP 279
Score = 28.7 bits (61), Expect = 5.9
Identities = 24/88 (27%), Positives = 25/88 (28%)
Frame = +3
Query: 603 GKRGXXGXXGXPFPXXPXPXKTPXXPPGXFXGXGXSGXSPPPXXGGGKXGXFPXXXXGGX 782
G+ G G G P TP P G G G PP G P G
Sbjct: 190 GEAGAPGPAGEPGTPAISEPLTPGAP-GEPGDSGPPGPPGPPGAPGNDGPPGPPGPKGAP 248
Query: 783 XPXGXKKXFXXXXGPPXKGAXKTPXXKG 866
P G P G TP KG
Sbjct: 249 GPDGPPGADGQSGPPGPPGPAGTPGEKG 276
>L29031-1|AAB72228.2| 830|Caenorhabditis elegans dynamin protein.
Length = 830
Score = 30.7 bits (66), Expect = 1.5
Identities = 16/53 (30%), Positives = 18/53 (33%)
Frame = +3
Query: 636 PFPXXPXPXKTPXXPPGXFXGXGXSGXSPPPXXGGGKXGXFPXXXXGGXXPXG 794
P P P + P P G G PPP GG G +P P G
Sbjct: 769 PAPAPPGGRQAPMPPRGGPGAPPPPGMRPPPGAPGGGGGMYPPLIPTRPGPGG 821
>J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 1 (col-1) gene, complete
cds. ).
Length = 296
Score = 30.7 bits (66), Expect = 1.5
Identities = 20/55 (36%), Positives = 21/55 (38%), Gaps = 2/55 (3%)
Frame = +3
Query: 603 GKRGXXGXXGXPFPXXPXPXKTPXXPPGXFXGXGXSGXSPPPXXGG--GKXGXFP 761
G G G G P P P P PPG G SG PP G G+ G P
Sbjct: 228 GPPGAPGNDGPPGPPGPKGAPGPDGPPG---ADGQSGPPGPPGPAGTPGEKGICP 279
Score = 28.7 bits (61), Expect = 5.9
Identities = 24/88 (27%), Positives = 25/88 (28%)
Frame = +3
Query: 603 GKRGXXGXXGXPFPXXPXPXKTPXXPPGXFXGXGXSGXSPPPXXGGGKXGXFPXXXXGGX 782
G+ G G G P TP P G G G PP G P G
Sbjct: 190 GEAGAPGPAGEPGTPAISEPLTPGAP-GEPGDSGPPGPPGPPGAPGNDGPPGPPGPKGAP 248
Query: 783 XPXGXKKXFXXXXGPPXKGAXKTPXXKG 866
P G P G TP KG
Sbjct: 249 GPDGPPGADGQSGPPGPPGPAGTPGEKG 276
>Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical
protein F23H12.4 protein.
Length = 301
Score = 30.3 bits (65), Expect = 1.9
Identities = 20/55 (36%), Positives = 21/55 (38%), Gaps = 2/55 (3%)
Frame = +3
Query: 603 GKRGXXGXXGXPFPXXPXPXKTPXXPPGXFXGXGXSGXSPPPXXGG--GKXGXFP 761
G G G G P P P P PPG G SG PP G G+ G P
Sbjct: 233 GPPGAPGNDGPPGPPGPKGAPGPDGPPGV---DGQSGPPGPPGPAGTPGEKGICP 284
Score = 28.7 bits (61), Expect = 5.9
Identities = 24/88 (27%), Positives = 25/88 (28%)
Frame = +3
Query: 603 GKRGXXGXXGXPFPXXPXPXKTPXXPPGXFXGXGXSGXSPPPXXGGGKXGXFPXXXXGGX 782
G+ G G G P TP P G G G PP G P G
Sbjct: 195 GEAGAPGPAGEPGTPAISEPLTPGAP-GEPGDSGPPGPPGPPGAPGNDGPPGPPGPKGAP 253
Query: 783 XPXGXKKXFXXXXGPPXKGAXKTPXXKG 866
P G P G TP KG
Sbjct: 254 GPDGPPGVDGQSGPPGPPGPAGTPGEKG 281
>U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protein
43 protein.
Length = 303
Score = 30.3 bits (65), Expect = 1.9
Identities = 27/94 (28%), Positives = 30/94 (31%), Gaps = 5/94 (5%)
Frame = +3
Query: 600 RGKRGXXGXXGXPFPXXPX--PXKT-PXXP--PGXFXGXGXSGXSPPPXXGGGKXGXFPX 764
RG G G G P P P ++ P P PG G +G PP G P
Sbjct: 190 RGPPGPPGEAGQPGPQGDAGTPAQSEPLTPGAPGEAGDAGPAGPPGPPGAPGNDGPPGPP 249
Query: 765 XXXGGXXPXGXKKXFXXXXGPPXKGAXKTPXXKG 866
G P G P G TP KG
Sbjct: 250 GPKGSPGPDGPAGVDGQAGPPGPPGQAGTPGEKG 283
>AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen
protein.
Length = 303
Score = 30.3 bits (65), Expect = 1.9
Identities = 27/94 (28%), Positives = 30/94 (31%), Gaps = 5/94 (5%)
Frame = +3
Query: 600 RGKRGXXGXXGXPFPXXPX--PXKT-PXXP--PGXFXGXGXSGXSPPPXXGGGKXGXFPX 764
RG G G G P P P ++ P P PG G +G PP G P
Sbjct: 190 RGPPGPPGEAGQPGPQGDAGTPAQSEPLTPGAPGEAGDAGPAGPPGPPGAPGNDGPPGPP 249
Query: 765 XXXGGXXPXGXKKXFXXXXGPPXKGAXKTPXXKG 866
G P G P G TP KG
Sbjct: 250 GPKGSPGPDGPAGVDGQAGPPGPPGQAGTPGEKG 283
>Z79596-2|CAC42251.1| 838|Caenorhabditis elegans Hypothetical
protein C02C6.1b protein.
Length = 838
Score = 29.9 bits (64), Expect = 2.5
Identities = 14/42 (33%), Positives = 16/42 (38%)
Frame = +3
Query: 636 PFPXXPXPXKTPXXPPGXFXGXGXSGXSPPPXXGGGKXGXFP 761
P P P + P P G G PPP GG G +P
Sbjct: 769 PAPAPPGGRQAPMPPRGGPGAPPPPGMRPPPGAPGGGGGMYP 810
>Z67990-1|CAA91932.1| 316|Caenorhabditis elegans Hypothetical
protein F02D10.1 protein.
Length = 316
Score = 29.9 bits (64), Expect = 2.5
Identities = 19/69 (27%), Positives = 20/69 (28%)
Frame = -2
Query: 741 PPLXGGGXKXRXPPXPXXXPGXXXGFXXXGXXRERGXPXNXXPPFSPGGVGRVXLXXXXN 562
PP G P P P G G G P N P PGG G+
Sbjct: 172 PPGPDGTPGEPGGPGPAGSPAGPSGPGPAGPPGPAGPPGNDGQPGQPGGPGQDGASSAGG 231
Query: 561 XPXPXPXXP 535
P P P
Sbjct: 232 EAGPGPAGP 240
Score = 28.7 bits (61), Expect = 5.9
Identities = 21/69 (30%), Positives = 21/69 (30%)
Frame = +3
Query: 636 PFPXXPXPXKTPXXPPGXFXGXGXSGXSPPPXXGGGKXGXFPXXXXGGXXPXGXKKXFXX 815
P P P P P PPG G G P G G P G P G
Sbjct: 159 PPPCQPCPAGPPG-PPGPDGTPGEPGGPGPAGSPAGPSGPGPAGPPGPAGPPGNDGQPGQ 217
Query: 816 XXGPPXKGA 842
GP GA
Sbjct: 218 PGGPGQDGA 226
>X64435-1|CAA45773.1| 318|Caenorhabditis elegans collagen protein.
Length = 318
Score = 29.9 bits (64), Expect = 2.5
Identities = 19/58 (32%), Positives = 20/58 (34%), Gaps = 4/58 (6%)
Frame = +3
Query: 600 RGKRGXXGXXGXPF----PXXPXPXKTPXXPPGXFXGXGXSGXSPPPXXGGGKXGXFP 761
RG +G G G P P P P PPG G G PP G G P
Sbjct: 223 RGPKGPPGSNGLPSQNSGPPGPIGEMGPPGPPGPRGEPGPPGPFGPPGDSGEPGGHCP 280
>U41624-3|AAF99944.1| 318|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 7 protein.
Length = 318
Score = 29.9 bits (64), Expect = 2.5
Identities = 19/58 (32%), Positives = 20/58 (34%), Gaps = 4/58 (6%)
Frame = +3
Query: 600 RGKRGXXGXXGXPF----PXXPXPXKTPXXPPGXFXGXGXSGXSPPPXXGGGKXGXFP 761
RG +G G G P P P P PPG G G PP G G P
Sbjct: 223 RGPKGPPGSNGLPSQNSGPPGPIGEMGPPGPPGPRGEPGPPGPFGPPGDSGEPGGHCP 280
>AF167982-1|AAD50438.1| 838|Caenorhabditis elegans dynamin protein.
Length = 838
Score = 29.9 bits (64), Expect = 2.5
Identities = 14/42 (33%), Positives = 16/42 (38%)
Frame = +3
Query: 636 PFPXXPXPXKTPXXPPGXFXGXGXSGXSPPPXXGGGKXGXFP 761
P P P + P P G G PPP GG G +P
Sbjct: 769 PAPAPPGGRQAPMPPRGGPGAPPPPGMRPPPGAPGGGGGMYP 810
>U41624-5|AAF99941.1| 314|Caenorhabditis elegans Collagen protein
174 protein.
Length = 314
Score = 29.5 bits (63), Expect = 3.4
Identities = 20/64 (31%), Positives = 20/64 (31%)
Frame = +3
Query: 603 GKRGXXGXXGXPFPXXPXPXKTPXXPPGXFXGXGXSGXSPPPXXGGGKXGXFPXXXXGGX 782
GK G G P P P PPG G G S P G P GG
Sbjct: 149 GKDGPDGPAATPAPNYDWCFDCPPGPPGPAGSAGVKGPSGNP---GAPGTDGPAGNKGGQ 205
Query: 783 XPXG 794
P G
Sbjct: 206 GPPG 209
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 29.5 bits (63), Expect = 3.4
Identities = 26/76 (34%), Positives = 26/76 (34%)
Frame = -1
Query: 838 PFXGGPXXXXKXFFXPXGXXPPXXXXGKXPIXPPPXXGGGEXPLXPXPXXXPGGXXGVXX 659
P GGP P G PP G P PPP GG P P P PGG G
Sbjct: 737 PITGGPPPPP-----PPGGLPPIS--GGPPPPPPPP--GGCPP--PPPPPPPGGFKGGPP 785
Query: 658 GXGKXGKGXPXKPKXP 611
G P P P
Sbjct: 786 PPPPPGMFAPMAPVIP 801
Score = 29.5 bits (63), Expect = 3.4
Identities = 14/36 (38%), Positives = 14/36 (38%)
Frame = +3
Query: 630 GXPFPXXPXPXKTPXXPPGXFXGXGXSGXSPPPXXG 737
G P P P P P PP G G PPP G
Sbjct: 756 GGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPG 791
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 29.5 bits (63), Expect = 3.4
Identities = 26/76 (34%), Positives = 26/76 (34%)
Frame = -1
Query: 838 PFXGGPXXXXKXFFXPXGXXPPXXXXGKXPIXPPPXXGGGEXPLXPXPXXXPGGXXGVXX 659
P GGP P G PP G P PPP GG P P P PGG G
Sbjct: 737 PITGGPPPPP-----PPGGLPPIS--GGPPPPPPPP--GGCPP--PPPPPPPGGFKGGPP 785
Query: 658 GXGKXGKGXPXKPKXP 611
G P P P
Sbjct: 786 PPPPPGMFAPMAPVIP 801
Score = 29.5 bits (63), Expect = 3.4
Identities = 14/36 (38%), Positives = 14/36 (38%)
Frame = +3
Query: 630 GXPFPXXPXPXKTPXXPPGXFXGXGXSGXSPPPXXG 737
G P P P P P PP G G PPP G
Sbjct: 756 GGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPG 791
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 29.5 bits (63), Expect = 3.4
Identities = 26/76 (34%), Positives = 26/76 (34%)
Frame = -1
Query: 838 PFXGGPXXXXKXFFXPXGXXPPXXXXGKXPIXPPPXXGGGEXPLXPXPXXXPGGXXGVXX 659
P GGP P G PP G P PPP GG P P P PGG G
Sbjct: 320 PITGGPPPPP-----PPGGLPPIS--GGPPPPPPPP--GGCPP--PPPPPPPGGFKGGPP 368
Query: 658 GXGKXGKGXPXKPKXP 611
G P P P
Sbjct: 369 PPPPPGMFAPMAPVIP 384
Score = 29.5 bits (63), Expect = 3.4
Identities = 14/36 (38%), Positives = 14/36 (38%)
Frame = +3
Query: 630 GXPFPXXPXPXKTPXXPPGXFXGXGXSGXSPPPXXG 737
G P P P P P PP G G PPP G
Sbjct: 339 GGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPG 374
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 29.1 bits (62), Expect = 4.4
Identities = 13/35 (37%), Positives = 13/35 (37%)
Frame = +3
Query: 657 PXKTPXXPPGXFXGXGXSGXSPPPXXGGGKXGXFP 761
P P PP F G G PPP G G P
Sbjct: 314 PGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMP 348
Score = 28.7 bits (61), Expect = 5.9
Identities = 24/77 (31%), Positives = 24/77 (31%)
Frame = +3
Query: 636 PFPXXPXPXKTPXXPPGXFXGXGXSGXSPPPXXGGGKXGXFPXXXXGGXXPXGXKKXFXX 815
P P P P TP PP G PPP G G P G P F
Sbjct: 274 PPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPG-MP-----GMPPPPPPSRF-- 325
Query: 816 XXGPPXKGAXKTPXXKG 866
GPP G P G
Sbjct: 326 --GPPGMGGMPPPPPPG 340
>U53333-6|AAA96159.2| 304|Caenorhabditis elegans Collagen protein
33 protein.
Length = 304
Score = 29.1 bits (62), Expect = 4.4
Identities = 17/64 (26%), Positives = 20/64 (31%)
Frame = -1
Query: 793 PXGXXPPXXXXGKXPIXPPPXXGGGEXPLXPXPXXXPGGXXGVXXGXGKXGKGXPXKPKX 614
P G P G P GG+ P P G G G+ G+ P
Sbjct: 157 PAGPPGPPGAPGDAGTNGAPGAPGGDAPPGEAGPKGPPGPPGSPGAPGEPGRPGDDAPSE 216
Query: 613 PLFP 602
PL P
Sbjct: 217 PLIP 220
Score = 28.3 bits (60), Expect = 7.8
Identities = 23/88 (26%), Positives = 25/88 (28%)
Frame = +3
Query: 603 GKRGXXGXXGXPFPXXPXPXKTPXXPPGXFXGXGXSGXSPPPXXGGGKXGXFPXXXXGGX 782
GK G G G P P + PP G +G PP G GG
Sbjct: 123 GKPGAPGLPGNPGKPPVQPCEPITPPPCKPCPDGPAGPPGPPGAPGDAGTNGAPGAPGGD 182
Query: 783 XPXGXKKXFXXXXGPPXKGAXKTPXXKG 866
P G P GA P G
Sbjct: 183 APPGEAGPKGPPGPPGSPGAPGEPGRPG 210
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 29.1 bits (62), Expect = 4.4
Identities = 13/35 (37%), Positives = 13/35 (37%)
Frame = +3
Query: 657 PXKTPXXPPGXFXGXGXSGXSPPPXXGGGKXGXFP 761
P P PP F G G PPP G G P
Sbjct: 324 PGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMP 358
Score = 28.7 bits (61), Expect = 5.9
Identities = 24/77 (31%), Positives = 24/77 (31%)
Frame = +3
Query: 636 PFPXXPXPXKTPXXPPGXFXGXGXSGXSPPPXXGGGKXGXFPXXXXGGXXPXGXKKXFXX 815
P P P P TP PP G PPP G G P G P F
Sbjct: 284 PPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPG-MP-----GMPPPPPPSRF-- 335
Query: 816 XXGPPXKGAXKTPXXKG 866
GPP G P G
Sbjct: 336 --GPPGMGGMPPPPPPG 350
>AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen protein
51 protein.
Length = 435
Score = 29.1 bits (62), Expect = 4.4
Identities = 20/66 (30%), Positives = 20/66 (30%), Gaps = 2/66 (3%)
Frame = +3
Query: 603 GKRGXXGXXGXPFPXXPXPXKTPXXPPGXFXGXGXSGXSPPPXXGG--GKXGXFPXXXXG 776
G G G G P P P PPG G G P G G G G
Sbjct: 190 GNAGPAGAPGVPGPDGDAGSPPPPGPPGPPGPPGNDGQPGAPGQDGQPGAPGTNTVNSPG 249
Query: 777 GXXPXG 794
G P G
Sbjct: 250 GPGPAG 255
>Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical
protein W01B6.7 protein.
Length = 301
Score = 28.7 bits (61), Expect = 5.9
Identities = 19/73 (26%), Positives = 21/73 (28%)
Frame = +2
Query: 653 PXXXNPXXXPGXXXGXGGKRXFXPPPXRGGXNXXFPPXXXXGXXPPGXKKXFXXXXXAPX 832
P P PG G G PP G P G PG + P
Sbjct: 164 PGPPGPDGNPGSPAGPSGPGPAGPPGPAGPAGNDGAPGAPGGPGEPGASE-----QGGPG 218
Query: 833 KRGPQNPXSKRGP 871
+ GP P GP
Sbjct: 219 EPGPAGPPGPAGP 231
>V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-2 coding for a collagen.
).
Length = 301
Score = 28.7 bits (61), Expect = 5.9
Identities = 19/73 (26%), Positives = 21/73 (28%)
Frame = +2
Query: 653 PXXXNPXXXPGXXXGXGGKRXFXPPPXRGGXNXXFPPXXXXGXXPPGXKKXFXXXXXAPX 832
P P PG G G PP G P G PG + P
Sbjct: 164 PGPPGPDGNPGSPAGPSGPGPAGPPGPAGPAGNDGAPGAPGGPGEPGASE-----QGGPG 218
Query: 833 KRGPQNPXSKRGP 871
+ GP P GP
Sbjct: 219 EPGPAGPPGPAGP 231
>J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 2 (col-2) gene, complete
cds. ).
Length = 301
Score = 28.7 bits (61), Expect = 5.9
Identities = 19/73 (26%), Positives = 21/73 (28%)
Frame = +2
Query: 653 PXXXNPXXXPGXXXGXGGKRXFXPPPXRGGXNXXFPPXXXXGXXPPGXKKXFXXXXXAPX 832
P P PG G G PP G P G PG + P
Sbjct: 164 PGPPGPDGNPGSPAGPSGPGPAGPPGPAGPAGNDGAPGAPGGPGEPGASE-----QGGPG 218
Query: 833 KRGPQNPXSKRGP 871
+ GP P GP
Sbjct: 219 EPGPAGPPGPAGP 231
>AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen
structural gene, probabledorsal and ventral cuticle
component, from embryo to adult,but maximal in dauer
(28.0 kD) (col-2) protein.
Length = 301
Score = 28.7 bits (61), Expect = 5.9
Identities = 19/73 (26%), Positives = 21/73 (28%)
Frame = +2
Query: 653 PXXXNPXXXPGXXXGXGGKRXFXPPPXRGGXNXXFPPXXXXGXXPPGXKKXFXXXXXAPX 832
P P PG G G PP G P G PG + P
Sbjct: 164 PGPPGPDGNPGSPAGPSGPGPAGPPGPAGPAGNDGAPGAPGGPGEPGASE-----QGGPG 218
Query: 833 KRGPQNPXSKRGP 871
+ GP P GP
Sbjct: 219 EPGPAGPPGPAGP 231
>AL132952-24|CAB61143.2| 351|Caenorhabditis elegans Hypothetical
protein Y51H4A.9 protein.
Length = 351
Score = 28.7 bits (61), Expect = 5.9
Identities = 18/72 (25%), Positives = 18/72 (25%)
Frame = +2
Query: 653 PXXXNPXXXPGXXXGXGGKRXFXPPPXRGGXNXXFPPXXXXGXXPPGXKKXFXXXXXAPX 832
P P PG GG PP G P PG AP
Sbjct: 219 PGQKGPSGAPGAPGQSGGSALPGPPGPAGSPGRSGQPGSNGNVGAPGAPGQVVDVPGAPG 278
Query: 833 KRGPQNPXSKRG 868
GP P G
Sbjct: 279 PAGPPGPPGPSG 290
>U58736-1|AAB00598.1| 302|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 3 protein.
Length = 302
Score = 28.3 bits (60), Expect = 7.8
Identities = 17/55 (30%), Positives = 19/55 (34%)
Frame = +3
Query: 630 GXPFPXXPXPXKTPXXPPGXFXGXGXSGXSPPPXXGGGKXGXFPXXXXGGXXPXG 794
G P P P + P PPG G +G P G K GG P G
Sbjct: 225 GPPGPPGPPGPQGPPGPPGKDGQPGKAGPPGLPGDPGEKGSDGLPGPHGGTGPRG 279
>U23172-13|ABH03527.1| 282|Caenorhabditis elegans Hypothetical
protein F25B5.7c protein.
Length = 282
Score = 28.3 bits (60), Expect = 7.8
Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Frame = -1
Query: 751 PIXPPPXXG-GGEXPLXPXPXXXPGGXXGVXXGXGKXGKGXP 629
P PPP G GG+ P P G G+ G G+G P
Sbjct: 151 PTGPPPLMGGGGDPRGPPGGMGGPPGHGGMGGPPGHGGQGGP 192
>U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical
protein F25B5.7a protein.
Length = 562
Score = 28.3 bits (60), Expect = 7.8
Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Frame = -1
Query: 751 PIXPPPXXG-GGEXPLXPXPXXXPGGXXGVXXGXGKXGKGXP 629
P PPP G GG+ P P G G+ G G+G P
Sbjct: 431 PTGPPPLMGGGGDPRGPPGGMGGPPGHGGMGGPPGHGGQGGP 472
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,124,672
Number of Sequences: 27780
Number of extensions: 224160
Number of successful extensions: 1563
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1292
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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