Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_K07
         (880 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    23   3.2  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    23   3.2  
EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    22   5.5  
DQ855497-1|ABH88184.1|  127|Tribolium castaneum chemosensory pro...    21   9.7  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    21   9.7  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    21   9.7  

>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = +1

Query: 121  ELECLPNF*LIFYTNIPSM*NRFPALRALDLGNVCAGTYALKLI 252
            E  CL  + +I+Y  +PSM          ++ NV  GT  + ++
Sbjct: 998  EFNCL-KYGVIYYVTVPSMYLLLVIYSVFNMNNVSWGTREVTVV 1040


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = +1

Query: 121  ELECLPNF*LIFYTNIPSM*NRFPALRALDLGNVCAGTYALKLI 252
            E  CL  + +I+Y  +PSM          ++ NV  GT  + ++
Sbjct: 998  EFNCL-KYGVIYYVTVPSMYLLLVIYSVFNMNNVSWGTREVTVV 1040


>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = +1

Query: 25  IMGILKIFDMPACSMIEQNRKNTIFRCVYLNIELECLPNF 144
           I G++   D+P     E  ++N I + +  N+  +CL  F
Sbjct: 374 IKGVVDSEDLPLNISREMLQQNKILKVIRKNLVKKCLELF 413


>DQ855497-1|ABH88184.1|  127|Tribolium castaneum chemosensory
           protein 11 protein.
          Length = 127

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -1

Query: 274 DTQKTRFRSVLVHMFRHKR 218
           +TQK   + ++ H+  HKR
Sbjct: 80  ETQKNGSKKIMRHLIDHKR 98


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -1

Query: 259 RFRSVLVHMFRHKRYLNLAHVTRGS 185
           RF   L+    H R+   +H TRG+
Sbjct: 268 RFTRHLIQRRTHTRHTTTSHNTRGT 292


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = -3

Query: 344 RRHHVAHH 321
           RRHH+ HH
Sbjct: 258 RRHHLVHH 265


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,399
Number of Sequences: 336
Number of extensions: 3113
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24306755
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)