Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP24_F_K07
(880 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F8.07c |hxk2||hexokinase 2 |Schizosaccharomyces pombe|chr 1... 28 1.5
SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc... 27 2.7
SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces... 27 2.7
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 27 2.7
SPBC20F10.06 |mad2||spindle checkpoint protein Mad2|Schizosaccha... 27 2.7
SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|ch... 27 4.7
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p... 26 6.1
SPAC23H4.07c |srp102||signal recognition particle receptor beta ... 26 8.1
SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ... 26 8.1
>SPAC4F8.07c |hxk2||hexokinase 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 455
Score = 28.3 bits (60), Expect = 1.5
Identities = 15/46 (32%), Positives = 27/46 (58%)
Frame = +3
Query: 393 DANFEQLMVSMLDERDKLVESLRETQERLGDSELRLKEVEKEXDAL 530
+ANF+Q + ++++ + ESLRE + ELR K ++K + L
Sbjct: 2 EANFQQAVKKLVNDFEYPTESLREAVKEF--DELRQKGLQKNGEVL 45
>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 767
Score = 27.5 bits (58), Expect = 2.7
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -2
Query: 471 PESLANSQPTYRVRLT*TPSVAQSSHPPRRPANS 370
P S A+ T R +T P +QSS R PA+S
Sbjct: 141 PSSAASGARTQRTSITNDPQSSQSSSVSRNPASS 174
>SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 497
Score = 27.5 bits (58), Expect = 2.7
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +3
Query: 150 NILYEYSEYVKPLPRVTCARFR*RL--CRNICTKTDRNRVFCVSCT 281
N LY + V+P P+ T R + CR K D + FC++CT
Sbjct: 12 NPLYIPNPNVEPTPKPTKRRTKTGCLTCRRRRIKCDETKPFCLNCT 57
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 27.5 bits (58), Expect = 2.7
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
Frame = +3
Query: 342 TISEDSISQRSSQVSGEDANFEQL--MVSMLDE---RDKLVESLRETQERLGDSELRLKE 506
T +E+ S + Q +G + + ML+E R++ + +RE + R+ + E RL E
Sbjct: 224 TPAENDSSAKGKQAAGSKRKGPNVTALQKMLEEKRAREEEEQRIREEEARIAEEEKRLAE 283
Query: 507 VEK 515
VE+
Sbjct: 284 VEE 286
>SPBC20F10.06 |mad2||spindle checkpoint protein
Mad2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 203
Score = 27.5 bits (58), Expect = 2.7
Identities = 21/61 (34%), Positives = 31/61 (50%)
Frame = +3
Query: 372 SSQVSGEDANFEQLMVSMLDERDKLVESLRETQERLGDSELRLKEVEKEXDALHXQIAAN 551
+S+ SGED Q V M+D D+ + +G+ E L+ V+KE AL QI A
Sbjct: 88 TSKCSGEDLERWQFNVEMVDTADQF--------QNIGNKEDELR-VQKEIQALIRQITAT 138
Query: 552 L 554
+
Sbjct: 139 V 139
>SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 538
Score = 26.6 bits (56), Expect = 4.7
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +1
Query: 193 ALRALDLGNVCAGTYALKLIEIVFSVCRVP 282
AL AL++GN K+++ +F+VC VP
Sbjct: 206 ALDALEVGNYTIKLNHRKILDGIFTVCGVP 235
>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2280
Score = 26.2 bits (55), Expect = 6.1
Identities = 18/66 (27%), Positives = 29/66 (43%)
Frame = +3
Query: 333 VMPTISEDSISQRSSQVSGEDANFEQLMVSMLDERDKLVESLRETQERLGDSELRLKEVE 512
V PTI+ED + + + S + MVS+ R+KL+ +R + LK +
Sbjct: 2043 VDPTINEDQMEMYADEESRAGVLEPEGMVSIKFRREKLLSLMRRCDHKYASLCNELKRDD 2102
Query: 513 KEXDAL 530
D L
Sbjct: 2103 LSADDL 2108
>SPAC23H4.07c |srp102||signal recognition particle receptor beta
subunit Srp102 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 227
Score = 25.8 bits (54), Expect = 8.1
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -3
Query: 368 LADTVLRYRRHHVAH 324
L DT+L+ R+HHV H
Sbjct: 128 LFDTILKCRKHHVPH 142
>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 886
Score = 25.8 bits (54), Expect = 8.1
Identities = 15/54 (27%), Positives = 22/54 (40%)
Frame = -3
Query: 353 LRYRRHHVAHHIPHFNLTLNQKTYGTRHTENTISISFSAYVPAQTLPKSSARNA 192
L + H H P +L +N GT H+ + SAY + S+ R A
Sbjct: 777 LEFVTRHPVPHCPSVDLYINSPQCGTLHSGVEYKFNVSAYACQPSTSISNTRLA 830
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,518,719
Number of Sequences: 5004
Number of extensions: 49942
Number of successful extensions: 161
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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