Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_K07
         (880 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50794-5|CAA90660.1| 1139|Caenorhabditis elegans Hypothetical pr...    74   1e-13
AF170122-1|AAD47840.1| 1139|Caenorhabditis elegans liprin-alpha ...    74   1e-13
AC024791-10|ABM74563.1| 1736|Caenorhabditis elegans Hypothetical...    34   0.12 
AF068721-5|AAC19259.1| 1475|Caenorhabditis elegans Holocentric c...    32   0.62 
U46674-2|AAA85754.1|  162|Caenorhabditis elegans Hypothetical pr...    31   1.4  
Z75530-4|CAA99794.2|  357|Caenorhabditis elegans Hypothetical pr...    30   2.5  
Z74042-17|CAA98537.1|  688|Caenorhabditis elegans Hypothetical p...    30   2.5  
Z19154-2|CAA79554.1|  504|Caenorhabditis elegans Hypothetical pr...    30   2.5  
AL031623-1|CAA20938.1|  688|Caenorhabditis elegans Hypothetical ...    30   2.5  
AL032627-7|CAD56256.1|  306|Caenorhabditis elegans Hypothetical ...    29   5.8  
AL032627-6|CAD56255.1|  331|Caenorhabditis elegans Hypothetical ...    29   5.8  
AL032627-5|CAD45607.2|  314|Caenorhabditis elegans Hypothetical ...    29   5.8  
AL032627-4|CAB54382.2|  327|Caenorhabditis elegans Hypothetical ...    29   5.8  
AL032627-3|CAB54381.2|  325|Caenorhabditis elegans Hypothetical ...    29   5.8  
AC025716-1|AAK39606.1|  788|Caenorhabditis elegans Hypothetical ...    29   5.8  
AB081596-1|BAC19843.1|  325|Caenorhabditis elegans cyclic AMP-re...    29   5.8  
AB081595-1|BAC19842.1|  306|Caenorhabditis elegans cyclic AMP-re...    29   5.8  

>Z50794-5|CAA90660.1| 1139|Caenorhabditis elegans Hypothetical
           protein F59F5.6 protein.
          Length = 1139

 Score = 74.1 bits (174), Expect = 1e-13
 Identities = 41/94 (43%), Positives = 55/94 (58%), Gaps = 4/94 (4%)
 Frame = +3

Query: 318 NMMCDVMPTISEDSISQRSSQVSGEDA-NFEQLMVSMLDERDKLVESLRETQERLGDSEL 494
           N+ CD+MPTISED +          D  N EQLM++ML++RDKL E L   + +L ++ L
Sbjct: 7   NINCDIMPTISEDGVDNGGPIDEPSDRDNIEQLMMNMLEDRDKLQEQLENYKVQLENAGL 66

Query: 495 RLKEVEKEXDALHXQI---AANLPQEFAALPKXL 587
           R KEVEKE D +  Q      NLPQE   + + L
Sbjct: 67  RTKEVEKERDMMKRQFEVHTQNLPQELQTMTREL 100


>AF170122-1|AAD47840.1| 1139|Caenorhabditis elegans liprin-alpha
           homolog SYD-2 protein.
          Length = 1139

 Score = 74.1 bits (174), Expect = 1e-13
 Identities = 41/94 (43%), Positives = 55/94 (58%), Gaps = 4/94 (4%)
 Frame = +3

Query: 318 NMMCDVMPTISEDSISQRSSQVSGEDA-NFEQLMVSMLDERDKLVESLRETQERLGDSEL 494
           N+ CD+MPTISED +          D  N EQLM++ML++RDKL E L   + +L ++ L
Sbjct: 7   NINCDIMPTISEDGVDNGGPIDEPSDRDNIEQLMMNMLEDRDKLQEQLENYKVQLENAGL 66

Query: 495 RLKEVEKEXDALHXQI---AANLPQEFAALPKXL 587
           R KEVEKE D +  Q      NLPQE   + + L
Sbjct: 67  RTKEVEKERDMMKRQFEVHTQNLPQELQTMTREL 100


>AC024791-10|ABM74563.1| 1736|Caenorhabditis elegans Hypothetical
            protein Y47G6A.17 protein.
          Length = 1736

 Score = 34.3 bits (75), Expect = 0.12
 Identities = 24/68 (35%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
 Frame = +3

Query: 336  MPTISEDSI--SQRSSQVSGEDANFEQLMVSMLDERDKLVESLRETQERLGDSELRLKEV 509
            + +IS DSI   +R SQ S ++        S   +  +L ESL+ TQERL +S+ +L ++
Sbjct: 1617 LKSISRDSILEERRLSQKSFDEQPNIPAPKSDTSDYYQLRESLQMTQERLIESQEKLIQM 1676

Query: 510  EKEXDALH 533
            E++  +LH
Sbjct: 1677 ERDYSSLH 1684


>AF068721-5|AAC19259.1| 1475|Caenorhabditis elegans Holocentric
            chromosome bindingprotein protein 1 protein.
          Length = 1475

 Score = 31.9 bits (69), Expect = 0.62
 Identities = 17/70 (24%), Positives = 35/70 (50%)
 Frame = +3

Query: 300  C*IKMWNMMCDVMPTISEDSISQRSSQVSGEDANFEQLMVSMLDERDKLVESLRETQERL 479
            C +K  N   ++   ++ D +S+ SSQ+   +A   +L  +  +  DKL   + ++ + +
Sbjct: 1045 CELKSQNEQMEIDTNLNMDQLSEMSSQLESANAELIELTRTSAETIDKLRGEVEKSTKAM 1104

Query: 480  GDSELRLKEV 509
             D E  L E+
Sbjct: 1105 MDQEEHLAEL 1114


>U46674-2|AAA85754.1|  162|Caenorhabditis elegans Hypothetical
           protein T26A8.3 protein.
          Length = 162

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 15/36 (41%), Positives = 17/36 (47%)
 Frame = +1

Query: 211 LGNVCAGTYALKLIEIVFSVCRVP*VFWFNVKLKCG 318
           + +VC G   L L    F V R    F FN KL CG
Sbjct: 1   MADVCIGQMCLSLCFFCFDVFRTDTTFHFNGKLTCG 36


>Z75530-4|CAA99794.2|  357|Caenorhabditis elegans Hypothetical
           protein C47E8.6 protein.
          Length = 357

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 15/57 (26%), Positives = 30/57 (52%)
 Frame = +3

Query: 345 ISEDSISQRSSQVSGEDANFEQLMVSMLDERDKLVESLRETQERLGDSELRLKEVEK 515
           I++D +  R+ ++SGE       + +   ER ++ +  R  +  LG+   R ++VEK
Sbjct: 78  ITKDRLKDRADKLSGELTKTRVELNAAQQERGRIQQFWRIAENGLGEERERTRDVEK 134


>Z74042-17|CAA98537.1|  688|Caenorhabditis elegans Hypothetical
           protein T11F9.12 protein.
          Length = 688

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
 Frame = -3

Query: 476 PLLSLSQTLNQLIAFV*HRHHQLLKVRILPGDLRTPLADTVLRYRRH----HVAHHIPHF 309
           P+LS+   + Q+      R+ Q    ++    L  PL +T  R   H    H  HH  H+
Sbjct: 269 PILSIHILIFQMYYIQPRRNPQPQPQKLERKPLLQPLKETTPRRHHHGHHHHGTHHHHHY 328

Query: 308 NLTLNQKTYGTRHTE 264
           + T+   T  TR +E
Sbjct: 329 SSTVRPTTTTTRESE 343


>Z19154-2|CAA79554.1|  504|Caenorhabditis elegans Hypothetical
           protein C40H1.3 protein.
          Length = 504

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
 Frame = +3

Query: 351 EDSISQRSSQVSGEDANFEQLMVSMLDERDKLVESLRETQER-LGDSELRLKEVEKE 518
           E  I ++  QV   +  +   M+    + DKLV +L+E QER   + + +LK++EKE
Sbjct: 451 EAEIRRQQQQVVVNNTGYPGKMI----DADKLVVALQEIQERKKAEKKKKLKDIEKE 503


>AL031623-1|CAA20938.1|  688|Caenorhabditis elegans Hypothetical
           protein T11F9.12 protein.
          Length = 688

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
 Frame = -3

Query: 476 PLLSLSQTLNQLIAFV*HRHHQLLKVRILPGDLRTPLADTVLRYRRH----HVAHHIPHF 309
           P+LS+   + Q+      R+ Q    ++    L  PL +T  R   H    H  HH  H+
Sbjct: 269 PILSIHILIFQMYYIQPRRNPQPQPQKLERKPLLQPLKETTPRRHHHGHHHHGTHHHHHY 328

Query: 308 NLTLNQKTYGTRHTE 264
           + T+   T  TR +E
Sbjct: 329 SSTVRPTTTTTRESE 343


>AL032627-7|CAD56256.1|  306|Caenorhabditis elegans Hypothetical
           protein Y41C4A.4e protein.
          Length = 306

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 17/64 (26%), Positives = 31/64 (48%)
 Frame = +3

Query: 339 PTISEDSISQRSSQVSGEDANFEQLMVSMLDERDKLVESLRETQERLGDSELRLKEVEKE 518
           PT++  S+      + GED +  +  V +L  R+   E  R+ +E +   E R+  +E +
Sbjct: 224 PTMTGGSMRMGGGPLHGEDESNRKRQVRLLKNREAAKECRRKKKEYVKCLENRVSVLENQ 283

Query: 519 XDAL 530
             AL
Sbjct: 284 NKAL 287


>AL032627-6|CAD56255.1|  331|Caenorhabditis elegans Hypothetical
           protein Y41C4A.4d protein.
          Length = 331

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 17/64 (26%), Positives = 31/64 (48%)
 Frame = +3

Query: 339 PTISEDSISQRSSQVSGEDANFEQLMVSMLDERDKLVESLRETQERLGDSELRLKEVEKE 518
           PT++  S+      + GED +  +  V +L  R+   E  R+ +E +   E R+  +E +
Sbjct: 249 PTMTGGSMRMGGGPLHGEDESNRKRQVRLLKNREAAKECRRKKKEYVKCLENRVSVLENQ 308

Query: 519 XDAL 530
             AL
Sbjct: 309 NKAL 312


>AL032627-5|CAD45607.2|  314|Caenorhabditis elegans Hypothetical
           protein Y41C4A.4c protein.
          Length = 314

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 17/64 (26%), Positives = 31/64 (48%)
 Frame = +3

Query: 339 PTISEDSISQRSSQVSGEDANFEQLMVSMLDERDKLVESLRETQERLGDSELRLKEVEKE 518
           PT++  S+      + GED +  +  V +L  R+   E  R+ +E +   E R+  +E +
Sbjct: 232 PTMTGGSMRMGGGPLHGEDESNRKRQVRLLKNREAAKECRRKKKEYVKCLENRVSVLENQ 291

Query: 519 XDAL 530
             AL
Sbjct: 292 NKAL 295


>AL032627-4|CAB54382.2|  327|Caenorhabditis elegans Hypothetical
           protein Y41C4A.4b protein.
          Length = 327

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 17/64 (26%), Positives = 31/64 (48%)
 Frame = +3

Query: 339 PTISEDSISQRSSQVSGEDANFEQLMVSMLDERDKLVESLRETQERLGDSELRLKEVEKE 518
           PT++  S+      + GED +  +  V +L  R+   E  R+ +E +   E R+  +E +
Sbjct: 245 PTMTGGSMRMGGGPLHGEDESNRKRQVRLLKNREAAKECRRKKKEYVKCLENRVSVLENQ 304

Query: 519 XDAL 530
             AL
Sbjct: 305 NKAL 308


>AL032627-3|CAB54381.2|  325|Caenorhabditis elegans Hypothetical
           protein Y41C4A.4a protein.
          Length = 325

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 17/64 (26%), Positives = 31/64 (48%)
 Frame = +3

Query: 339 PTISEDSISQRSSQVSGEDANFEQLMVSMLDERDKLVESLRETQERLGDSELRLKEVEKE 518
           PT++  S+      + GED +  +  V +L  R+   E  R+ +E +   E R+  +E +
Sbjct: 243 PTMTGGSMRMGGGPLHGEDESNRKRQVRLLKNREAAKECRRKKKEYVKCLENRVSVLENQ 302

Query: 519 XDAL 530
             AL
Sbjct: 303 NKAL 306


>AC025716-1|AAK39606.1|  788|Caenorhabditis elegans Hypothetical
           protein Y39G10AR.11 protein.
          Length = 788

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 20/98 (20%), Positives = 47/98 (47%), Gaps = 2/98 (2%)
 Frame = +3

Query: 228 RNICTKTDRNRVFCVSCTIGLLV*C*IKMWNMMCDVMPTISE--DSISQRSSQVSGEDAN 401
           R +    D N+   +  T+ L   C  ++  +  +  P + E    ++   +++   ++ 
Sbjct: 19  RRVTELQDENK--SLRLTLALRTDCEHELERVRNETHPGVEELEKKLASAENEIRVMEST 76

Query: 402 FEQLMVSMLDERDKLVESLRETQERLGDSELRLKEVEK 515
            ++LM ++   RD+L + LRE  + + D +   +E+EK
Sbjct: 77  NKELMATLATTRDQLGKMLRERNQLVKDVDELHEEIEK 114


>AB081596-1|BAC19843.1|  325|Caenorhabditis elegans cyclic
           AMP-response element bindingprotein 1 gamma 2 protein.
          Length = 325

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 17/64 (26%), Positives = 31/64 (48%)
 Frame = +3

Query: 339 PTISEDSISQRSSQVSGEDANFEQLMVSMLDERDKLVESLRETQERLGDSELRLKEVEKE 518
           PT++  S+      + GED +  +  V +L  R+   E  R+ +E +   E R+  +E +
Sbjct: 243 PTMTGGSMRMGGGPLHGEDESNRKRQVRLLKNREAAKECRRKKKEYVKCLENRVSVLENQ 302

Query: 519 XDAL 530
             AL
Sbjct: 303 NKAL 306


>AB081595-1|BAC19842.1|  306|Caenorhabditis elegans cyclic
           AMP-response element bindingprotein 1 beta protein.
          Length = 306

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 17/64 (26%), Positives = 31/64 (48%)
 Frame = +3

Query: 339 PTISEDSISQRSSQVSGEDANFEQLMVSMLDERDKLVESLRETQERLGDSELRLKEVEKE 518
           PT++  S+      + GED +  +  V +L  R+   E  R+ +E +   E R+  +E +
Sbjct: 224 PTMTGGSMRMGGGPLHGEDESNRKRQVRLLKNREAAKECRRKKKEYVKCLENRVSVLENQ 283

Query: 519 XDAL 530
             AL
Sbjct: 284 NKAL 287


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,357,768
Number of Sequences: 27780
Number of extensions: 294399
Number of successful extensions: 1029
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 916
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1027
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)