Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_K07
         (880 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    23   3.7  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    23   4.9  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   8.6  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   8.6  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   8.6  
AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding prote...    22   8.6  
AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding prote...    22   8.6  

>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = +2

Query: 314 VEYDVRRDAYD 346
           VEY+V RDAYD
Sbjct: 43  VEYEVVRDAYD 53


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -1

Query: 409 CSKFASSPETCELRWLILSSDIVGI 335
           C +F  + +T    WL+L    +GI
Sbjct: 126 CGRFYGNIQTVXNNWLLLEGHSIGI 150


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -2

Query: 549 WRRSVYEGHLSPFPL 505
           W R +Y+G    FPL
Sbjct: 636 WGRHIYDGRAMGFPL 650


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -2

Query: 549 WRRSVYEGHLSPFPL 505
           W R +Y+G    FPL
Sbjct: 636 WGRHIYDGRAMGFPL 650


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +3

Query: 150 NILYEYSEYVKPLPRVTCARFR*RLCRNICTKTD 251
           ++ +  S  VK +  V   RF+  L RNI  K D
Sbjct: 50  HVAHGKSTIVKAISGVQTVRFKNELERNITIKLD 83


>AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding protein
           ASP6 protein.
          Length = 146

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -1

Query: 412 SCSKFASSPETCELRW 365
           +C K  +S E CE+ W
Sbjct: 114 TCKKEVTSTEGCEVAW 129


>AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding protein
           protein.
          Length = 120

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -1

Query: 412 SCSKFASSPETCELRW 365
           +C K  +S E CE+ W
Sbjct: 88  TCKKEVTSTEGCEVAW 103


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,292
Number of Sequences: 438
Number of extensions: 3708
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28523595
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)