Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP24_F_K06
(1024 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 171 1e-43
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 165 9e-42
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 101 2e-22
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 94 2e-20
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 94 3e-20
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 91 2e-19
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 91 3e-19
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 85 2e-17
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch... 67 4e-12
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 67 4e-12
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 63 5e-11
SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p... 61 2e-10
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p... 59 9e-10
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb... 59 9e-10
SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces pom... 56 6e-09
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p... 56 6e-09
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch... 54 2e-08
SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch... 44 5e-05
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 34 0.028
SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce... 33 0.086
SPBC16A3.01 |spn3|SPBC543.01c|septin Spn3|Schizosaccharomyces po... 31 0.26
SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces p... 31 0.26
SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr 1||... 31 0.35
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 31 0.35
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ... 29 0.80
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||... 28 1.8
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 28 1.8
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy... 28 1.8
SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces pombe... 28 1.8
SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr 2... 27 3.2
SPBC30D10.08 |mgm101||mitochondrial nucleoid protein|Schizosacch... 27 5.6
SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|c... 26 9.8
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 171 bits (416), Expect = 1e-43
Identities = 81/128 (63%), Positives = 100/128 (78%)
Frame = +3
Query: 162 MSSRKKLLLKVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVDDRIVTMQ 341
M+ +KK LLKVIILG+SGVGKTS+MNQ+VN+KFS YKATIGADFLTKEV+VDD++VT+Q
Sbjct: 1 MAGKKKHLLKVIILGESGVGKTSIMNQYVNRKFSKDYKATIGADFLTKEVLVDDKVVTLQ 60
Query: 342 IWDTAGQERFQSLGVXFYRGADCCVLXFDVTPPNTXTSFESWXDXIPDTAHHPVDPX*LS 521
+WDTAGQERFQSLGV FYRGADCCVL +DV + + +SW D A P +P
Sbjct: 61 LWDTAGQERFQSLGVAFYRGADCCVLVYDVNNSKSFETLDSWRDEFLIQA-SPSNPE-TF 118
Query: 522 PFVISGKQ 545
PF++ G +
Sbjct: 119 PFILLGNK 126
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 165 bits (401), Expect = 9e-42
Identities = 76/128 (59%), Positives = 98/128 (76%)
Frame = +3
Query: 162 MSSRKKLLLKVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVDDRIVTMQ 341
MS++K++ LKV+ILGDSGVGKT LMNQFVN+KFS +YKATIGADFLTK+V+VDD++VT+Q
Sbjct: 1 MSAQKRVFLKVVILGDSGVGKTCLMNQFVNQKFSREYKATIGADFLTKDVVVDDKLVTLQ 60
Query: 342 IWDTAGQERFQSLGVXFYRGADCCVLXFDVTPPNTXTSFESWXDXIPDTAHHPVDPX*LS 521
+WDTAGQERFQSLG+ FYRGADCCV+ ++V + S E+W + +
Sbjct: 61 LWDTAGQERFQSLGMAFYRGADCCVIVYNVNNSKSFDSVENWRQ---EFLYQTSQDECAF 117
Query: 522 PFVISGKQ 545
PF+I G Q
Sbjct: 118 PFIIVGNQ 125
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 101 bits (241), Expect = 2e-22
Identities = 42/97 (43%), Positives = 67/97 (69%)
Frame = +3
Query: 189 KVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVDDRIVTMQIWDTAGQER 368
K++ LG+ VGKTSL+ +F+ +F N Y+ATIG DFL+K + ++DR V +Q+WDTAGQER
Sbjct: 13 KLVFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 72
Query: 369 FQSLGVXFYRGADCCVLXFDVTPPNTXTSFESWXDXI 479
F+SL + R + ++ +D+T N+ + E W + +
Sbjct: 73 FRSLIPSYIRDSSVAIIVYDITNHNSFVNTEKWIEDV 109
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 94.3 bits (224), Expect = 2e-20
Identities = 41/94 (43%), Positives = 67/94 (71%), Gaps = 1/94 (1%)
Frame = +3
Query: 189 KVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVDDRI-VTMQIWDTAGQE 365
K+++LGDS VGK+SL+ +FV +F + ++TIGA FLT+ + +D+ V ++IWDTAGQE
Sbjct: 16 KLVLLGDSAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTLPIDENTSVKLEIWDTAGQE 75
Query: 366 RFQSLGVXFYRGADCCVLXFDVTPPNTXTSFESW 467
R++SL +YR A+C ++ +D+T + +SW
Sbjct: 76 RYKSLAPMYYRNANCAIVVYDITQAASLEKAKSW 109
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 93.9 bits (223), Expect = 3e-20
Identities = 37/103 (35%), Positives = 70/103 (67%)
Frame = +3
Query: 183 LLKVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVDDRIVTMQIWDTAGQ 362
L K +++GDSGVGK++L+ +F +F+ + K+TIG +F T+ +++D++ + QIWDTAGQ
Sbjct: 10 LFKTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQ 69
Query: 363 ERFQSLGVXFYRGADCCVLXFDVTPPNTXTSFESWXDXIPDTA 491
ER++++ +YRGA ++ +D+T ++ + W + + A
Sbjct: 70 ERYRAITSAYYRGAVGALIVYDITKQSSFDNVGRWLKELREHA 112
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 91.5 bits (217), Expect = 2e-19
Identities = 39/106 (36%), Positives = 67/106 (63%)
Frame = +3
Query: 162 MSSRKKLLLKVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVDDRIVTMQ 341
M+ L K++++GDSGVGK+ L+ +F + ++ Y +TIG DF + ++ + V +Q
Sbjct: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQ 60
Query: 342 IWDTAGQERFQSLGVXFYRGADCCVLXFDVTPPNTXTSFESWXDXI 479
IWDTAGQERF+++ +YRGA ++ +DVT ++ + + W I
Sbjct: 61 IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQDSFNNVKQWLQEI 106
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 90.6 bits (215), Expect = 3e-19
Identities = 40/107 (37%), Positives = 66/107 (61%)
Frame = +3
Query: 183 LLKVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVDDRIVTMQIWDTAGQ 362
L+K++++GDSGVGK+ L+ +F F+ + TIG DF + + +D + + +QIWDTAGQ
Sbjct: 9 LIKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 68
Query: 363 ERFQSLGVXFYRGADCCVLXFDVTPPNTXTSFESWXDXIPDTAHHPV 503
ERF+++ +YRGA +L +DVT + + +W + A V
Sbjct: 69 ERFRTITTAYYRGAMGILLLYDVTDKKSFDNVRTWFSNVEQHASENV 115
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 84.6 bits (200), Expect = 2e-17
Identities = 39/103 (37%), Positives = 63/103 (61%), Gaps = 4/103 (3%)
Frame = +3
Query: 183 LLKVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIV----DDRIVTMQIWD 350
L+K+++ G SG GK+ L+ +FV ++ +Q T+G DF ++ + V + + +QIWD
Sbjct: 9 LVKIVLAGPSGTGKSCLLQRFVKNQWDDQVSHTVGIDFASRIISVGMGNQQKRIKLQIWD 68
Query: 351 TAGQERFQSLGVXFYRGADCCVLXFDVTPPNTXTSFESWXDXI 479
TAGQE+F+S+ +YRGA VL +DVT ++ SW I
Sbjct: 69 TAGQEKFRSVARNYYRGAAGAVLVYDVTNKDSFEELSSWLSDI 111
>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 198
Score = 66.9 bits (156), Expect = 4e-12
Identities = 30/99 (30%), Positives = 52/99 (52%)
Frame = +3
Query: 171 RKKLLLKVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVDDRIVTMQIWD 350
+ + +KV ++GDS +GKTSLM +V F + T+G +F+ K + + + +T IWD
Sbjct: 6 KNNVTIKVGMIGDSSIGKTSLMVTYVQGSFDEESTQTLGVNFMEKTISIRNTEITFSIWD 65
Query: 351 TAGQERFQSLGVXFYRGADCCVLXFDVTPPNTXTSFESW 467
GQ F ++ A + FD++ +T S + W
Sbjct: 66 LGGQREFVNMLPMVCNDAVAILFMFDLSRKSTLNSIKEW 104
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 66.9 bits (156), Expect = 4e-12
Identities = 32/92 (34%), Positives = 49/92 (53%)
Frame = +3
Query: 156 CKMSSRKKLLLKVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVDDRIVT 335
C S +K + K++ILGD GKTSL+N F F Y+ TI +++ ++ VD +
Sbjct: 4 CFGSKKKPIYRKIVILGDGAAGKTSLLNVFTKGYFPQVYEPTIFENYI-HDIFVDGNSIE 62
Query: 336 MQIWDTAGQERFQSLGVXFYRGADCCVLXFDV 431
+ +WDTAGQE + L Y ++ F V
Sbjct: 63 LSLWDTAGQEEYDQLRSLSYSDTHVIMICFAV 94
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 63.3 bits (147), Expect = 5e-11
Identities = 28/93 (30%), Positives = 48/93 (51%)
Frame = +3
Query: 189 KVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVDDRIVTMQIWDTAGQER 368
K++++GD G GKT+ + + + +F +Y AT+G + + + +WDTAGQE+
Sbjct: 11 KLVLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEVHPLHFHTNFGEICFNVWDTAGQEK 70
Query: 369 FQSLGVXFYRGADCCVLXFDVTPPNTXTSFESW 467
L +Y C ++ FDVT T + W
Sbjct: 71 LGGLRDGYYIQGQCGIIMFDVTSRITYKNVPHW 103
>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 61.3 bits (142), Expect = 2e-10
Identities = 35/105 (33%), Positives = 54/105 (51%), Gaps = 1/105 (0%)
Frame = +3
Query: 186 LKVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVDDRIVTMQIWDTAGQE 365
+K +++GD VGKT L+ + KF + Y T+ D V++ D T+ ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSDYVPTV-FDNYAVTVMIGDEPYTLGLFDTAGQE 62
Query: 366 RFQSLGVXFYRGADCCVLXFDVTPPNTXTSFESWXD-XIPDTAHH 497
+ L Y D ++ F VT P SFE+ + P+ HH
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVTSP---ASFENVKEKWFPEVHHH 104
>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 59.3 bits (137), Expect = 9e-10
Identities = 29/105 (27%), Positives = 55/105 (52%), Gaps = 2/105 (1%)
Frame = +3
Query: 159 KMSSRKKLLLKVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVI-VDDRIVT 335
K S+ + K++++GD G GKT L+ F + F +Y T+ +++T + +++
Sbjct: 6 KSGSKSETSKKLVVVGDGGCGKTCLLIVFSSGTFPERYVPTVFENYITDITYGPNSKVIE 65
Query: 336 MQIWDTAGQERFQSLGVXFYRGADCCVLXFDVTPPNTXTSF-ESW 467
+ +WDTAGQE + L Y ++ +L F + P + + E W
Sbjct: 66 LALWDTAGQEEYDRLRPLSYPNSNVILLCFSIDCPASLNNVTEKW 110
>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 59.3 bits (137), Expect = 9e-10
Identities = 29/98 (29%), Positives = 55/98 (56%), Gaps = 1/98 (1%)
Frame = +3
Query: 189 KVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVDDRIVTMQIWDTAGQER 368
K++++GD GKTSL++ F F +Y T+ ++++ + VD + V + +WDTAGQE
Sbjct: 10 KLVVVGDGACGKTSLLSVFTLGYFPTEYVPTVFENYVS-DCRVDGKSVQLALWDTAGQEE 68
Query: 369 FQSLGVXFYRGADCCVLXFDVTPPNTXTSFES-WXDXI 479
++ L Y A ++ F + P++ + + W + I
Sbjct: 69 YERLRPMSYAKAHIILVGFAIDSPDSLENVSTKWIEEI 106
>SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 56.4 bits (130), Expect = 6e-09
Identities = 32/102 (31%), Positives = 52/102 (50%), Gaps = 1/102 (0%)
Frame = +3
Query: 177 KLLLKVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVDDRIVTMQIWDTA 356
+L K++I+GD GKT L+ F F Y T+ +++ +V VD R V + +WDTA
Sbjct: 4 ELRRKLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVA-DVEVDGRHVELALWDTA 62
Query: 357 GQERFQSLGVXFYRGADCCVLXFDVTPPNTXTSF-ESWXDXI 479
GQE + L Y + ++ F V P++ + E W +
Sbjct: 63 GQEDYDRLRPLSYPDSHVILICFAVDSPDSLDNVQEKWISEV 104
>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 56.4 bits (130), Expect = 6e-09
Identities = 31/102 (30%), Positives = 51/102 (50%), Gaps = 1/102 (0%)
Frame = +3
Query: 177 KLLLKVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVDDRIVTMQIWDTA 356
+L K++I+GD GKT L+ F F Y T+ +++ +V VD R + + +WDTA
Sbjct: 4 ELRRKLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVA-DVEVDGRHIELALWDTA 62
Query: 357 GQERFQSLGVXFYRGADCCVLXFDVTPPNTXTSF-ESWXDXI 479
GQE + L Y + ++ F V P + + E W +
Sbjct: 63 GQEDYDRLRPLSYPDSHVVLICFSVDAPESLDNVQEKWISEV 104
>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 54.4 bits (125), Expect = 2e-08
Identities = 26/97 (26%), Positives = 52/97 (53%)
Frame = +3
Query: 189 KVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVDDRIVTMQIWDTAGQER 368
K++++GD GVGK++L Q + F ++Y TI D K+ +D + + DTAGQE
Sbjct: 10 KLVVVGDGGVGKSALTIQLIQSHFVDEYDPTI-EDSYRKKCEIDGEGALLDVLDTAGQEE 68
Query: 369 FQSLGVXFYRGADCCVLXFDVTPPNTXTSFESWXDXI 479
+ ++ + R + +L +++T ++ ++ I
Sbjct: 69 YSAMREQYMRTGEGFLLVYNITSRSSFDEISTFYQQI 105
>SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 185
Score = 43.6 bits (98), Expect = 5e-05
Identities = 29/91 (31%), Positives = 44/91 (48%)
Frame = +3
Query: 189 KVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVDDRIVTMQIWDTAGQER 368
++ +LG VGK+SL Q+V F Y TI F +K + + +I DTAGQ+
Sbjct: 8 RIAVLGSRSVGKSSLTVQYVENHFVESYYPTIENTF-SKNIKYKGQEFATEIIDTAGQDE 66
Query: 369 FQSLGVXFYRGADCCVLXFDVTPPNTXTSFE 461
+ L G VL + +T + +SFE
Sbjct: 67 YSILNSKHSIGIHGYVLVYSIT---SKSSFE 94
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 34.3 bits (75), Expect = 0.028
Identities = 20/92 (21%), Positives = 41/92 (44%)
Frame = +3
Query: 153 LCKMSSRKKLLLKVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVDDRIV 332
+ + K+ ++V++LG GKT+++ +N+ N+ T G T EV +
Sbjct: 6 ILRQQKLKEREVRVLLLGLDNAGKTTILKCLLNEDV-NEVSPTFGFQIRTLEV----EGL 60
Query: 333 TMQIWDTAGQERFQSLGVXFYRGADCCVLXFD 428
IWD GQ+ ++ ++ + + D
Sbjct: 61 RFTIWDIGGQKTLRNFWKNYFESTEAIIWVVD 92
>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 496
Score = 32.7 bits (71), Expect = 0.086
Identities = 25/68 (36%), Positives = 33/68 (48%)
Frame = +3
Query: 156 CKMSSRKKLLLKVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVDDRIVT 335
CK RK + V ILG S GK+SL+N N++ S G EV+VD
Sbjct: 232 CKEVLRKGI--NVAILGPSNAGKSSLINLLANRRIS-IVSPQSGTTRDAIEVLVDINGFP 288
Query: 336 MQIWDTAG 359
+ + DTAG
Sbjct: 289 VLLSDTAG 296
>SPBC16A3.01 |spn3|SPBC543.01c|septin Spn3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 412
Score = 31.1 bits (67), Expect = 0.26
Identities = 12/32 (37%), Positives = 22/32 (68%)
Frame = +3
Query: 159 KMSSRKKLLLKVIILGDSGVGKTSLMNQFVNK 254
K SS+K + L ++++GD G+G+T+ +N K
Sbjct: 44 KKSSKKGIPLNLMVVGDVGLGRTAFINTLCEK 75
>SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 464
Score = 31.1 bits (67), Expect = 0.26
Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Frame = +3
Query: 171 RKKLLLKVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLT-KEVIVD-DRIVTMQI 344
R + + +I++G+S +GKT+ +N F+ +N ++ DF+ K + D D+ + I
Sbjct: 114 RNGIDINLIVVGESSLGKTTFVNSFLQSNDTN-FRPKKTMDFVEHKATLSDGDQKFNLTI 172
Query: 345 WDTAG 359
DT G
Sbjct: 173 VDTPG 177
>SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 469
Score = 30.7 bits (66), Expect = 0.35
Identities = 13/42 (30%), Positives = 25/42 (59%)
Frame = +3
Query: 171 RKKLLLKVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADF 296
R+ V++LG+SG GK++L+N +N+ + ++ DF
Sbjct: 91 RQGFNFNVLVLGESGSGKSTLVNTLLNRDVYPPTQKSLTGDF 132
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 30.7 bits (66), Expect = 0.35
Identities = 20/86 (23%), Positives = 36/86 (41%)
Frame = +3
Query: 186 LKVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVDDRIVTMQIWDTAGQE 365
+++++LG GKT+++ K NQ TI E + I +WD GQ+
Sbjct: 22 MRILMLGLDAAGKTTILY----KLKLNQSVVTIPTVGFNVETVTYKNI-KFNVWDVGGQD 76
Query: 366 RFQSLGVXFYRGADCCVLXFDVTPPN 443
+ + L ++ G + D N
Sbjct: 77 KIRPLWRHYFTGTKGLIFVVDSADSN 102
>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 308
Score = 29.5 bits (63), Expect = 0.80
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Frame = +3
Query: 189 KVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGA--DFLTKEVIVDDRIVTMQIWDTAGQ 362
KV+++G SG GK+S M V + + +GA D V +V + +WD GQ
Sbjct: 4 KVLLMGRSGSGKSS-MRSIVFSNYVAKDTRRLGATIDIEHSHVRFLGNLV-LNLWDCGGQ 61
Query: 363 ERF 371
E F
Sbjct: 62 EAF 64
>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 380
Score = 28.3 bits (60), Expect = 1.8
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = +3
Query: 159 KMSSRKKLLLKVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGAD 293
K+ SR + +++ G+SG+GKT+ F N FS K+ +G +
Sbjct: 20 KIVSRNGVAFTLMLCGESGLGKTT----FCNTLFSTTIKSHMGPE 60
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 28.3 bits (60), Expect = 1.8
Identities = 10/23 (43%), Positives = 18/23 (78%)
Frame = +3
Query: 186 LKVIILGDSGVGKTSLMNQFVNK 254
++V+I GD GVGK+SL++ + +
Sbjct: 4 VRVVICGDQGVGKSSLISALIQE 26
>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 180
Score = 28.3 bits (60), Expect = 1.8
Identities = 16/81 (19%), Positives = 39/81 (48%)
Frame = +3
Query: 186 LKVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVDDRIVTMQIWDTAGQE 365
++++++G GKT+++ + + TIG + T V+ R ++ +WD GQ+
Sbjct: 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIP-TIGFNVET----VEYRNISFTVWDVGGQD 72
Query: 366 RFQSLGVXFYRGADCCVLXFD 428
+ + L +++ + D
Sbjct: 73 KIRPLWRHYFQNTQGIIFVVD 93
>SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 28.3 bits (60), Expect = 1.8
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +3
Query: 333 TMQIWDTAGQERFQSLGVXFYRGADCCVLXFDVTPPN 443
T +IWD +++ +L V + G D VL ++ PN
Sbjct: 315 TFRIWDVRNKQKTSALTVNAHPGVDVNVLSWNTRVPN 351
>SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 470
Score = 27.5 bits (58), Expect = 3.2
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Frame = +3
Query: 147 KLLCKMSSRKKLL--LKVIILGDSGVGKTSLMNQFVNK 254
K L S++KKL L V ++G VGK+S++N VN+
Sbjct: 255 KSLKSYSAKKKLKSSLTVGVIGYPNVGKSSVINALVNR 292
>SPBC30D10.08 |mgm101||mitochondrial nucleoid
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 267
Score = 26.6 bits (56), Expect = 5.6
Identities = 11/22 (50%), Positives = 17/22 (77%), Gaps = 2/22 (9%)
Frame = +2
Query: 119 YIRIF--HHCVKIVVQNVFTEK 178
YIR+F +CV++ V+NV T+K
Sbjct: 227 YIRVFKRENCVEVFVENVLTKK 248
>SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 519
Score = 25.8 bits (54), Expect = 9.8
Identities = 9/31 (29%), Positives = 20/31 (64%)
Frame = -1
Query: 343 ICIVTILSSTITSFVRKSAPIVALYWLENFL 251
I +V++++ T+ + + +API YW + F+
Sbjct: 373 IMVVSMIAFTVGTILIATAPIHQTYWAQTFV 403
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,724,111
Number of Sequences: 5004
Number of extensions: 48842
Number of successful extensions: 187
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 533248662
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -