Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP24_F_K05
(894 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z73102-4|CAA97408.1| 203|Caenorhabditis elegans Hypothetical pr... 144 8e-35
Z54216-2|CAA90945.1| 242|Caenorhabditis elegans Hypothetical pr... 35 0.068
AF003390-4|AAB54273.1| 1165|Caenorhabditis elegans Hypothetical ... 33 0.36
Z54238-8|CAA90998.3| 459|Caenorhabditis elegans Hypothetical pr... 32 0.64
Z81537-2|CAB04373.1| 682|Caenorhabditis elegans Hypothetical pr... 29 3.4
Z79757-1|CAB60999.1| 299|Caenorhabditis elegans Hypothetical pr... 29 3.4
AF026056-1|AAB81844.1| 298|Caenorhabditis elegans NK-2 class ho... 29 3.4
U97007-5|AAB52295.1| 564|Caenorhabditis elegans Hypothetical pr... 29 5.9
AF045644-3|AAC02602.2| 205|Caenorhabditis elegans Hypothetical ... 29 5.9
AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nucl... 29 5.9
Z36719-1|CAA85311.2| 576|Caenorhabditis elegans Hypothetical pr... 28 7.8
U80845-1|AAK39181.1| 1217|Caenorhabditis elegans Prion-like-(q/n... 28 7.8
AF303262-1|AAG50220.1| 362|Caenorhabditis elegans gap junction ... 28 7.8
AF067219-9|AAX88822.1| 266|Caenorhabditis elegans Innexin prote... 28 7.8
AF067219-8|AAC17025.1| 362|Caenorhabditis elegans Innexin prote... 28 7.8
>Z73102-4|CAA97408.1| 203|Caenorhabditis elegans Hypothetical
protein B0035.3 protein.
Length = 203
Score = 144 bits (349), Expect = 8e-35
Identities = 81/146 (55%), Positives = 94/146 (64%), Gaps = 8/146 (5%)
Frame = +3
Query: 309 FEKIKINTEKNKSISERVSIFKGDITKLEIDAIVNAANSRLKAGGGVDGAIHRAAG-PFL 485
FEK K+ K++ R+S++ GDITKL +DAIVNAANSRL GGGVDGAIHRAAG L
Sbjct: 13 FEKFKVA----KNVLGRISVWDGDITKLSVDAIVNAANSRLAGGGGVDGAIHRAAGRKQL 68
Query: 486 QAECDSIGGCPTGDAKVTGGYNL-PAKYIIHTVGPQ------DGSAEKLESCYEKCLSYQ 644
Q EC GC GDA +T G N+ K IIHTVGPQ D E L +CY L
Sbjct: 69 QEECQQYNGCAVGDAVITSGCNINHIKKIIHTVGPQVYGNVTDERRENLVACYRTSLDIA 128
Query: 645 QEYQIKSIAFPCISTGIYGFPNRLAA 722
E +KSIAF CISTG+YG+PN AA
Sbjct: 129 IENGMKSIAFCCISTGVYGYPNDDAA 154
>Z54216-2|CAA90945.1| 242|Caenorhabditis elegans Hypothetical
protein T24H10.3 protein.
Length = 242
Score = 35.1 bits (77), Expect = 0.068
Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 1/93 (1%)
Frame = +3
Query: 132 STKWEIEKNRILKLSLEEKRKIYKSSDFIDLENVDPWSKYLNKSQGIDSKKSTTDDLKEF 311
+TK+++ LS EEKRKIY + +D + ++ K+ + KK T +D+ F
Sbjct: 57 TTKFQLLNKAYQILSDEEKRKIYDETGSVD-DEAGELNEDALKAWRMIFKKVTKEDIDSF 115
Query: 312 EK-IKINTEKNKSISERVSIFKGDITKLEIDAI 407
K + + E+ + F GDI K+ AI
Sbjct: 116 MKTYQGSREQKDELVVHYEKFNGDIAKIREYAI 148
>AF003390-4|AAB54273.1| 1165|Caenorhabditis elegans Hypothetical
protein R155.3 protein.
Length = 1165
Score = 32.7 bits (71), Expect = 0.36
Identities = 27/93 (29%), Positives = 50/93 (53%), Gaps = 15/93 (16%)
Frame = +3
Query: 243 SKYLNKSQGIDSKKSTTDDLKEFEKIKINTE----KNKSIS--ERVSIFK-----GDITK 389
+ Y+N + +K + TD LK+FEKI +++ + IS +++ FK GD+ K
Sbjct: 433 TSYINSVK--KTKHAETDALKDFEKIGLHSRVIGTATRGISNMQKLVDFKDLADIGDLVK 490
Query: 390 LEIDAIVNAAN----SRLKAGGGVDGAIHRAAG 476
E++ + + N + LKA G++G + A+G
Sbjct: 491 SEVEKVKDQLNDENVANLKALAGIEGQLKTASG 523
>Z54238-8|CAA90998.3| 459|Caenorhabditis elegans Hypothetical
protein T28C6.7 protein.
Length = 459
Score = 31.9 bits (69), Expect = 0.64
Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 2/92 (2%)
Frame = +3
Query: 114 VATMVNSTKWEIEKNRILKLSLEE-KRKIYKSSDFIDLENVDPWSKYLNKSQGIDSKKST 290
V T+ +S WEIE+N +L+ + K K++K + +D V S + +
Sbjct: 288 VDTLRSSRNWEIEQNALLRDQVAHLKEKVHKLTTELDASEVAKRSLSSEVDESKKLMELM 347
Query: 291 TDDLKEFEK-IKINTEKNKSISERVSIFKGDI 383
+DL + E I N + K+I E + K I
Sbjct: 348 VEDLLQAESAINYNQCQKKAIFEDIDRLKDAI 379
>Z81537-2|CAB04373.1| 682|Caenorhabditis elegans Hypothetical
protein F41D3.2 protein.
Length = 682
Score = 29.5 bits (63), Expect = 3.4
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Frame = +3
Query: 114 VATMVNSTKWEIEKNRILKLSLEEKRKIYKSSDF--IDLENVDPWSKYL 254
V T+ + +++ K +ILKLS K KIY + F ID +V+ +K+L
Sbjct: 537 VTTLEQDSVYQVMKQQILKLSENVKYKIYIMNAFPRIDQPSVEMIAKWL 585
>Z79757-1|CAB60999.1| 299|Caenorhabditis elegans Hypothetical
protein F55B12.1 protein.
Length = 299
Score = 29.5 bits (63), Expect = 3.4
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3
Query: 246 KYLNKSQGIDSKKSTTDDLKEFEKIKINTEK 338
K N+ GID +KS+ DD + K+K N K
Sbjct: 15 KEKNEETGIDEEKSSEDDCSKRSKVKSNPSK 45
>AF026056-1|AAB81844.1| 298|Caenorhabditis elegans NK-2 class
homeodomain protein protein.
Length = 298
Score = 29.5 bits (63), Expect = 3.4
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3
Query: 246 KYLNKSQGIDSKKSTTDDLKEFEKIKINTEK 338
K N+ GID +KS+ DD + K+K N K
Sbjct: 15 KEKNEETGIDEEKSSEDDCSKRSKVKSNPSK 45
>U97007-5|AAB52295.1| 564|Caenorhabditis elegans Hypothetical
protein ZC196.5 protein.
Length = 564
Score = 28.7 bits (61), Expect = 5.9
Identities = 16/64 (25%), Positives = 30/64 (46%)
Frame = +3
Query: 165 LKLSLEEKRKIYKSSDFIDLENVDPWSKYLNKSQGIDSKKSTTDDLKEFEKIKINTEKNK 344
++++ + K K K++ +D D W Y S + D L+E K+K ++
Sbjct: 271 MEITKQRKSKAVKNNQELD----DDWGAYTTSSNAEEKISKKCDSLQEPVKLKRTESESS 326
Query: 345 SISE 356
SI+E
Sbjct: 327 SITE 330
>AF045644-3|AAC02602.2| 205|Caenorhabditis elegans Hypothetical
protein F57H12.6 protein.
Length = 205
Score = 28.7 bits (61), Expect = 5.9
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +3
Query: 237 PWSKYLNKSQGIDSKKSTTDDLKEFEKIKINTEK-NKSISER 359
PWS+ K + + K+ D+LK+F++ K EK +K E+
Sbjct: 108 PWSEKPEKIEALAEKELDGDNLKKFKEFKEKKEKEDKEYKEK 149
>AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nuclear
anchorage protein1 protein.
Length = 8545
Score = 28.7 bits (61), Expect = 5.9
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +3
Query: 117 ATMVNSTKWEIEKNRILKLSLEEKRKIYKSSDFIDLENVDPWSKYLNK 260
ATM+N +E +++ E+ RK +SS IDL+ + +K L K
Sbjct: 8340 ATMLNDAIAHLENQKVVVARSEKDRKFVESSTSIDLDQLLAEAKRLLK 8387
>Z36719-1|CAA85311.2| 576|Caenorhabditis elegans Hypothetical
protein C06C3.3 protein.
Length = 576
Score = 28.3 bits (60), Expect = 7.8
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
Frame = +3
Query: 144 EIEKNRILKLSLEEKRKIYKSSDFIDLENVDPWSKYLNKSQGIDSKKSTTDDLKEFEKI- 320
+IEK KLS +K + KS + + D + L + + I+ K EK+
Sbjct: 397 KIEKKVPEKLSKPQKTETTKSKE--RAKWADQGNTTLKREKSIEKSTRQGKIDKSIEKLI 454
Query: 321 --KI-NTEKNKSISERVSIFKGDITKLEID 401
I NTEK S ++ + KG++ K ++D
Sbjct: 455 DKSIDNTEKLSSQKPKIDMAKGELRKFDVD 484
>U80845-1|AAK39181.1| 1217|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 15
protein.
Length = 1217
Score = 28.3 bits (60), Expect = 7.8
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +3
Query: 471 AGPFLQAECDSIGGCPTGDAKVTGGYNLP 557
AGP +Q + GG P KVT G N+P
Sbjct: 1126 AGPMIQQGKNIAGGYPPNQNKVTPGKNVP 1154
>AF303262-1|AAG50220.1| 362|Caenorhabditis elegans gap junction
innexin protein.
Length = 362
Score = 28.3 bits (60), Expect = 7.8
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = -2
Query: 716 KTIRKTVNSSGYTRKSDRFYLVFLLVRQAFFVAGFQFLCRSI 591
KTI T +S R ++ VFLL AFF+ Q++ +SI
Sbjct: 10 KTITPTYDSDAIDRLR-YYFTVFLLTSSAFFIMAKQYVGQSI 50
>AF067219-9|AAX88822.1| 266|Caenorhabditis elegans Innexin protein
17, isoform b protein.
Length = 266
Score = 28.3 bits (60), Expect = 7.8
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = -2
Query: 716 KTIRKTVNSSGYTRKSDRFYLVFLLVRQAFFVAGFQFLCRSI 591
KTI T +S R ++ VFLL AFF+ Q++ +SI
Sbjct: 10 KTITPTYDSDAIDRLR-YYFTVFLLTSSAFFIMAKQYVGQSI 50
>AF067219-8|AAC17025.1| 362|Caenorhabditis elegans Innexin protein
17, isoform a protein.
Length = 362
Score = 28.3 bits (60), Expect = 7.8
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = -2
Query: 716 KTIRKTVNSSGYTRKSDRFYLVFLLVRQAFFVAGFQFLCRSI 591
KTI T +S R ++ VFLL AFF+ Q++ +SI
Sbjct: 10 KTITPTYDSDAIDRLR-YYFTVFLLTSSAFFIMAKQYVGQSI 50
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,093,447
Number of Sequences: 27780
Number of extensions: 412768
Number of successful extensions: 1349
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1345
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2265843888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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