Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_K05
         (894 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    24   1.6  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    24   1.6  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        23   3.8  
DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex det...    22   6.6  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    22   8.7  

>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +1

Query: 697 TVFRIVLQHT*RYVQ-LGSSRNEYRNEPNYILHVLTYR 807
           T + + L H    +Q L SSR +YR +   +   + YR
Sbjct: 365 TCYALFLGHATNLIQSLDSSRRQYREKVKQVEEYMAYR 402


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +1

Query: 697 TVFRIVLQHT*RYVQ-LGSSRNEYRNEPNYILHVLTYR 807
           T + + L H    +Q L SSR +YR +   +   + YR
Sbjct: 333 TCYALFLGHATNLIQSLDSSRRQYREKVKQVEEYMAYR 370


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = -3

Query: 526 SPVGHPPIESHSACKKGPAARCMAPSTP 443
           SP G  P  S S+    PAAR  +   P
Sbjct: 63  SPTGSSPQHSGSSASTSPAARTTSSMYP 90


>DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -3

Query: 475 PAARCMAPSTPPPAF 431
           P  RC+ P TP P F
Sbjct: 146 PRFRCIGPPTPFPRF 160


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
 Frame = +1

Query: 550 IYQLNISSTLLGPKMDRQRNWNPATKNA-CRTN 645
           I + +  S   G    ++RN NP  KNA C  N
Sbjct: 10  ILKRSAESEFEGASSPKKRNKNPQPKNAVCALN 42


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 237,163
Number of Sequences: 438
Number of extensions: 5289
Number of successful extensions: 18
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28904421
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)