Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_K02
         (875 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4G3.17 |||HD domain|Schizosaccharomyces pombe|chr 3|||Manual      148   1e-36
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    26   6.1  

>SPCC4G3.17 |||HD domain|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 198

 Score =  148 bits (358), Expect = 1e-36
 Identities = 75/154 (48%), Positives = 105/154 (68%), Gaps = 5/154 (3%)
 Frame = +2

Query: 299 ILEFLELVGRLKHVKRTGWILCDINDCETIAGHMYRMGIMTFLLTEENNPTKLDRIKCLQ 478
           I+ FL+ + RLK   RTGW+   I   E+IA HMYRMGI+T L    N+P+ +++ +CL+
Sbjct: 9   IVPFLDCLSRLKTTPRTGWLYHGIEKPESIADHMYRMGILTMLC---NDPS-INKERCLK 64

Query: 479 IALIHDLAECIVGDLTPHCGVSPEEKHRREDEAMKTISGL-----TGIAGDRMYELYKEY 643
           IA++HD+AE IVGD+TPH  VS EEKHR E EAM +I+         +  + + EL+ EY
Sbjct: 65  IAVVHDMAESIVGDITPHENVSKEEKHRMESEAMVSITQQLIPLNLSLQAEEIKELFLEY 124

Query: 644 EDXSSPEAKFAKDLDRYDMILQAFEYEKRENTPK 745
           E  S+PEAKF KD+D+++MI Q FEYE++ N  K
Sbjct: 125 ESASTPEAKFVKDIDKFEMIAQMFEYERKFNGEK 158


>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 13/58 (22%), Positives = 24/58 (41%)
 Frame = +2

Query: 530 HCGVSPEEKHRREDEAMKTISGLTGIAGDRMYELYKEYEDXSSPEAKFAKDLDRYDMI 703
           HC   P   H+ E  +    S    +    + + Y EYE+ +S  +   + +  YD +
Sbjct: 84  HCSTQP---HKDEAYSHHGYSSTMALDDSSLAQTYHEYEEGTSGNSPLRRAIGSYDFL 138


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,210,159
Number of Sequences: 5004
Number of extensions: 65358
Number of successful extensions: 156
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)