Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP24_F_K01
(917 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q5UAT5 Cluster: 60S ribosomal protein L6; n=15; Bilater... 286 6e-76
UniRef50_Q9V9W3 Cluster: 60S ribosomal protein L6; n=6; Metazoa|... 157 5e-37
UniRef50_Q02878 Cluster: 60S ribosomal protein L6; n=71; Euteleo... 137 3e-31
UniRef50_Q6B8B0 Cluster: 60S ribosomal protein L6; n=1; Ixodes p... 128 1e-28
UniRef50_A7S4S4 Cluster: Predicted protein; n=5; Eukaryota|Rep: ... 122 1e-26
UniRef50_A7L698 Cluster: 60S ribosomal protein L6; n=1; Artemia ... 105 2e-21
UniRef50_Q7XY83 Cluster: 60S ribosomal protein L6; n=1; Griffith... 101 3e-20
UniRef50_Q5DE99 Cluster: 60S ribosomal protein L6; n=1; Schistos... 95 2e-18
UniRef50_A3F4R4 Cluster: 60S ribosomal protein L6; n=1; Taenia a... 90 6e-17
UniRef50_Q4N3I8 Cluster: 60S ribosomal protein L6e, putative; n=... 88 3e-16
UniRef50_Q54D63 Cluster: 60S ribosomal protein L6; n=2; Eukaryot... 87 6e-16
UniRef50_Q1DRV0 Cluster: 60S ribosomal protein L6; n=15; Pezizom... 86 1e-15
UniRef50_Q9C9C6 Cluster: 60S ribosomal protein L6-2; n=11; Eukar... 82 2e-14
UniRef50_Q5CM54 Cluster: 60S ribosomal protein L6; n=2; Cryptosp... 81 4e-14
UniRef50_Q01IK4 Cluster: 60S ribosomal protein L6; n=17; Eukaryo... 81 5e-14
UniRef50_Q7SH22 Cluster: 60S ribosomal protein L6; n=2; Sordaria... 78 3e-13
UniRef50_Q4X638 Cluster: 60S ribosomal subunit protein L6e, puta... 74 4e-12
UniRef50_P47991 Cluster: 60S ribosomal protein L6; n=2; Caenorha... 73 1e-11
UniRef50_Q02326 Cluster: 60S ribosomal protein L6-A; n=16; Dikar... 73 1e-11
UniRef50_UPI0000DC20AA Cluster: UPI0000DC20AA related cluster; n... 71 6e-11
UniRef50_A0CYT3 Cluster: 60S ribosomal protein L6; n=5; Oligohym... 68 4e-10
UniRef50_UPI0000DA1E66 Cluster: PREDICTED: similar to ribosomal ... 66 1e-09
UniRef50_Q4Q4D3 Cluster: 60S ribosomal protein L6, putative; n=1... 66 2e-09
UniRef50_A2EBD1 Cluster: 60S ribosomal protein L6, putative; n=7... 55 3e-06
UniRef50_A5C5P0 Cluster: 60S ribosomal protein L6; n=1; Vitis vi... 54 5e-06
UniRef50_Q8SR91 Cluster: 60S RIBOSOMAL PROTEIN L6; n=1; Encephal... 48 3e-04
UniRef50_Q8U2L5 Cluster: 50S ribosomal protein L14e; n=5; Archae... 41 0.051
UniRef50_Q7QVA1 Cluster: 60S ribosomal protein L27; n=1; Giardia... 40 0.089
UniRef50_P54054 Cluster: 50S ribosomal protein L14e; n=8; Euryar... 40 0.12
UniRef50_A7QIH5 Cluster: Chromosome chr12 scaffold_103, whole ge... 39 0.16
UniRef50_A0N0S1 Cluster: 60S ribosomal protein L6; n=1; Strongyl... 38 0.27
UniRef50_Q8ZYB4 Cluster: 50S ribosomal protein L14e; n=14; Archa... 38 0.36
UniRef50_Q4ZTN3 Cluster: Sensor protein; n=5; Pseudomonas|Rep: S... 34 5.9
UniRef50_A2RKU3 Cluster: Cation-transporting ATPase; n=2; Lactoc... 34 5.9
UniRef50_Q98RL7 Cluster: 60S ribosomal protein L6B; n=1; Guillar... 34 5.9
UniRef50_A7ET80 Cluster: Putative uncharacterized protein; n=1; ... 34 5.9
UniRef50_Q5KML3 Cluster: VpsB, putative; n=2; Basidiomycota|Rep:... 33 7.7
>UniRef50_Q5UAT5 Cluster: 60S ribosomal protein L6; n=15;
Bilateria|Rep: 60S ribosomal protein L6 - Bombyx mori
(Silk moth)
Length = 273
Score = 286 bits (701), Expect = 6e-76
Identities = 141/164 (85%), Positives = 142/164 (86%)
Frame = +3
Query: 159 KKNLRKNPGTMILGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKN 338
KK K P LGNGVMRFSKSKMFHKKAKYKFIG LTVVVKQIGGEKN
Sbjct: 22 KKKSTKKPRNYDLGNGVMRFSKSKMFHKKAKYKFIGKKNPKPEKPKKLTVVVKQIGGEKN 81
Query: 339 GGTRTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVV 518
GGTRTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVV
Sbjct: 82 GGTRTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVV 141
Query: 519 LVGILPSGLLLVTGPFAFNSCPLRRIPQRYVICTSTRISLGQLQ 650
LVGILPSGLLLVTGPFAFNSCPLRRIPQRYVI TSTRISLG +
Sbjct: 142 LVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFK 185
Score = 68.9 bits (161), Expect = 2e-10
Identities = 32/49 (65%), Positives = 32/49 (65%)
Frame = +1
Query: 640 GNFKLPXHFXDDXFXKNKKCVXRXXXXKRGDDIFATXKXKXVPSXXXXT 786
GNFKLP HF DD F KNKKCV R K GDDIFAT K K VPS T
Sbjct: 182 GNFKLPKHFNDDYFKKNKKCVKRTVKRKEGDDIFATKKEKYVPSEQRKT 230
>UniRef50_Q9V9W3 Cluster: 60S ribosomal protein L6; n=6;
Metazoa|Rep: 60S ribosomal protein L6 - Drosophila
melanogaster (Fruit fly)
Length = 262
Score = 157 bits (380), Expect = 5e-37
Identities = 80/160 (50%), Positives = 104/160 (65%)
Frame = +3
Query: 162 KNLRKNPGTMILGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNG 341
K +K+P L G++R+SK++M+ ++A Y+ VK+IGG KNG
Sbjct: 15 KKGKKHPVNSYLKGGILRYSKAQMYKRRALYRLKDKKSPVVEKAKVPIKKVKKIGGPKNG 74
Query: 342 GTRTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVL 521
G RTV LK+ K+ YPT+ ++ FS+H R R NL GTV ILLAGRH GKRVVL
Sbjct: 75 GERTVFLKKSKASYPTKTFVKKRPSKANFSEHKRNTRRNLTPGTVLILLAGRHQGKRVVL 134
Query: 522 VGILPSGLLLVTGPFAFNSCPLRRIPQRYVICTSTRISLG 641
+ +L SGLLLVTGPFA NSCPLRR+ QRYVI TS+++ LG
Sbjct: 135 LKVLASGLLLVTGPFALNSCPLRRVSQRYVIGTSSKVDLG 174
>UniRef50_Q02878 Cluster: 60S ribosomal protein L6; n=71;
Euteleostomi|Rep: 60S ribosomal protein L6 - Homo
sapiens (Human)
Length = 288
Score = 137 bits (332), Expect = 3e-31
Identities = 73/170 (42%), Positives = 103/170 (60%), Gaps = 6/170 (3%)
Frame = +3
Query: 159 KKNLRKNPGTMILGNGVMRFSKSKMFHKKA----KYKFIGXXXXXXXXXXXLTVVVKQIG 326
K + +NP +L G+ R+S+S M+ +KA KY L V K +G
Sbjct: 41 KPHCSRNP---VLVRGIGRYSRSAMYSRKAMYKRKYSAAKSKVEKKKKEKVLATVTKPVG 97
Query: 327 GEKNGGTRTVPLKRRKSFYPTQEKIRA--SSGGRPFSKHVRRIRPNLKIGTVCILLAGRH 500
G+KNGGTR V L++ +YPT++ R S G +PFS+HVR++R ++ GT+ I+L GRH
Sbjct: 98 GDKNGGTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFSQHVRKLRASITPGTILIILTGRH 157
Query: 501 AGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVICTSTRISLGQLQ 650
GKRVV + L SGLLLVTGP N PLRR Q++VI TST+I + ++
Sbjct: 158 RGKRVVFLKQLASGLLLVTGPLVLNRVPLRRTHQKFVIATSTKIDISNVK 207
>UniRef50_Q6B8B0 Cluster: 60S ribosomal protein L6; n=1; Ixodes
pacificus|Rep: 60S ribosomal protein L6 - Ixodes
pacificus (western blacklegged tick)
Length = 268
Score = 128 bits (310), Expect = 1e-28
Identities = 69/154 (44%), Positives = 94/154 (61%), Gaps = 2/154 (1%)
Frame = +3
Query: 195 LGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGTRTVPLKRRK 374
L GV FS+SKMFHK+ +K V VK++ GEKNGG R +PLK+ +
Sbjct: 30 LPGGVWLFSRSKMFHKRGLFKVKHAAPTKEKRKRKKRVTVKRVKGEKNGGKRVLPLKKER 89
Query: 375 SFYPTQE--KIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLL 548
YPT++ + + +S +P S+ +R + GTV ILLAG H GKRVV + L +GLL
Sbjct: 90 RSYPTEDSPQHKRTSHMKPSSRTRVALRKRITPGTVLILLAGPHRGKRVVFLKQLKTGLL 149
Query: 549 LVTGPFAFNSCPLRRIPQRYVICTSTRISLGQLQ 650
VTGP+ N CPLRRI Q YVI TST++ L +++
Sbjct: 150 PVTGPYGVNGCPLRRINQIYVIATSTKLDLSKVK 183
>UniRef50_A7S4S4 Cluster: Predicted protein; n=5; Eukaryota|Rep:
Predicted protein - Nematostella vectensis
Length = 244
Score = 122 bits (295), Expect = 1e-26
Identities = 68/152 (44%), Positives = 90/152 (59%)
Frame = +3
Query: 195 LGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGTRTVPLKRRK 374
L G+ R+S+S ++ K+A YK T K IGG+KNGG R VP++R
Sbjct: 15 LAPGISRYSRSAIYKKRALYKRKKTGVKKVVQDEPRTKT-KDIGGDKNGGKRVVPVQRES 73
Query: 375 SFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLV 554
+YPT++ +R R + ++R ++ GTV ILLAG H GKRVV + L SGLLLV
Sbjct: 74 RYYPTED-VRRRLANRK-KPGMAKLRSSITPGTVLILLAGAHRGKRVVFLKQLNSGLLLV 131
Query: 555 TGPFAFNSCPLRRIPQRYVICTSTRISLGQLQ 650
TGPF N PLRRIPQ YVI TST I + ++
Sbjct: 132 TGPFKINGVPLRRIPQSYVIATSTHIDVSDVK 163
>UniRef50_A7L698 Cluster: 60S ribosomal protein L6; n=1; Artemia
franciscana|Rep: 60S ribosomal protein L6 - Artemia
sanfranciscana (Brine shrimp) (Artemia franciscana)
Length = 241
Score = 105 bits (251), Expect = 2e-21
Identities = 54/115 (46%), Positives = 75/115 (65%)
Frame = +3
Query: 306 VVVKQIGGEKNGGTRTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCIL 485
V+ K+IGG+KNGGTR V ++ FYP + + +K+ +IR +L+ GT+ IL
Sbjct: 44 VIEKKIGGDKNGGTRLVSTRKPPQFYPINSRQKRFHRRLVNNKNPPKIRKSLQPGTILIL 103
Query: 486 LAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVICTSTRISLGQLQ 650
LAG + GKRVVL+ L SGLLLV+GP N PLRR+ Q+ VI TSTRI + ++
Sbjct: 104 LAGVNRGKRVVLLKALKSGLLLVSGPLKVNRVPLRRVHQKLVIATSTRIDISNVK 158
>UniRef50_Q7XY83 Cluster: 60S ribosomal protein L6; n=1; Griffithsia
japonica|Rep: 60S ribosomal protein L6 - Griffithsia
japonica (Red alga)
Length = 216
Score = 101 bits (242), Expect = 3e-20
Identities = 53/116 (45%), Positives = 72/116 (62%)
Frame = +3
Query: 300 LTVVVKQIGGEKNGGTRTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVC 479
+ ++ K IGG KNGG R VP K+ +YP +K + K + +RP++K GT+
Sbjct: 20 IKMIKKPIGGAKNGGYRLVPEKKGPKWYPADDKKTPVPSRKNVHKPTK-LRPSIKSGTIV 78
Query: 480 ILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVICTSTRISLGQL 647
ILLAG G RVV++ L SG LLVTGP+A N PL R+ QRYVI TST I + ++
Sbjct: 79 ILLAGVFRGSRVVVLKQLDSGQLLVTGPYAVNRIPLTRVDQRYVIATSTSIDVSKV 134
>UniRef50_Q5DE99 Cluster: 60S ribosomal protein L6; n=1; Schistosoma
japonicum|Rep: 60S ribosomal protein L6 - Schistosoma
japonicum (Blood fluke)
Length = 238
Score = 95.1 bits (226), Expect = 2e-18
Identities = 52/99 (52%), Positives = 65/99 (65%), Gaps = 3/99 (3%)
Frame = +3
Query: 357 PLKRRKSFYPTQE---KIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVG 527
P R Y TQ+ K+R + FS HVR+IR +++ GTV ILLAG H GKRV+ +
Sbjct: 55 PKTRFPRSYVTQQGKRKLRLRRA-KCFSNHVRKIRSSIQPGTVLILLAGPHKGKRVIFLK 113
Query: 528 ILPSGLLLVTGPFAFNSCPLRRIPQRYVICTSTRISLGQ 644
L SGLLLVTGPF +N PLRR+ Q YVI TSTRI + +
Sbjct: 114 ALKSGLLLVTGPFKYNGVPLRRVNQCYVIATSTRIDISK 152
>UniRef50_A3F4R4 Cluster: 60S ribosomal protein L6; n=1; Taenia
asiatica|Rep: 60S ribosomal protein L6 - Taenia asiatica
(Asian tapeworm)
Length = 212
Score = 90.2 bits (214), Expect = 6e-17
Identities = 44/75 (58%), Positives = 53/75 (70%)
Frame = +3
Query: 426 FSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQR 605
F+ H RRIR ++ G V ILLAGRH KRVV + L SGLLLVTGPF +N PLRR+ QR
Sbjct: 86 FADHRRRIRKSITPGKVLILLAGRHRAKRVVFLKSLASGLLLVTGPFKYNGVPLRRVNQR 145
Query: 606 YVICTSTRISLGQLQ 650
YVI T TRI + ++
Sbjct: 146 YVIATKTRIKIKNIK 160
>UniRef50_Q4N3I8 Cluster: 60S ribosomal protein L6e, putative; n=3;
Piroplasmida|Rep: 60S ribosomal protein L6e, putative -
Theileria parva
Length = 212
Score = 87.8 bits (208), Expect = 3e-16
Identities = 48/93 (51%), Positives = 61/93 (65%)
Frame = +3
Query: 354 VPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGIL 533
V L RRK+ K + GR ++ V ++R +LK G V ILL G + GKRVVL+ +L
Sbjct: 12 VKLNRRKTVVTRLGKTKVV--GRKYAS-VPKVRESLKPGAVLILLTGSYKGKRVVLLKVL 68
Query: 534 PSGLLLVTGPFAFNSCPLRRIPQRYVICTSTRI 632
SGLLLVTGPF+FN PLRR+ RYVI TST +
Sbjct: 69 KSGLLLVTGPFSFNGVPLRRVNSRYVIATSTNV 101
>UniRef50_Q54D63 Cluster: 60S ribosomal protein L6; n=2;
Eukaryota|Rep: 60S ribosomal protein L6 - Dictyostelium
discoideum AX4
Length = 236
Score = 87.0 bits (206), Expect = 6e-16
Identities = 48/108 (44%), Positives = 66/108 (61%)
Frame = +3
Query: 342 GTRTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVL 521
G R + K K +IR+++ + K +R ++ GTV I+LAGR AGKRVV
Sbjct: 54 GKRVIAAKASKFAPSIPAEIRSTAAKKVQQKVA--LRKSITPGTVLIILAGRFAGKRVVA 111
Query: 522 VGILPSGLLLVTGPFAFNSCPLRRIPQRYVICTSTRISLGQLQTAXTL 665
+ L SGL+L+TGPF N PLRRI QRYVI TST+I + ++ A T+
Sbjct: 112 LKQLDSGLILITGPFKVNGVPLRRIDQRYVIATSTKIDVSSVKVAATI 159
>UniRef50_Q1DRV0 Cluster: 60S ribosomal protein L6; n=15;
Pezizomycotina|Rep: 60S ribosomal protein L6 -
Coccidioides immitis
Length = 206
Score = 86.2 bits (204), Expect = 1e-15
Identities = 48/116 (41%), Positives = 70/116 (60%), Gaps = 4/116 (3%)
Frame = +3
Query: 303 TVVVKQIGGEKN--GGTRTVPLKRRKS--FYPTQEKIRASSGGRPFSKHVRRIRPNLKIG 470
T+ K +G K G R +P +K+ +YP ++ + + + H ++RP+L+ G
Sbjct: 4 TLDSKSVGQTKKFGKGERVIPHPSQKAQKWYPADDEPQPKKARK--TAHPTKLRPSLQPG 61
Query: 471 TVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVICTSTRISL 638
T+ ILLAGR GKRV+L+ L G+LLVTGPF N PLRR+ RYVI TS+ + L
Sbjct: 62 TILILLAGRFRGKRVILLKHLGQGVLLVTGPFKLNGVPLRRVNARYVIATSSTVDL 117
>UniRef50_Q9C9C6 Cluster: 60S ribosomal protein L6-2; n=11;
Eukaryota|Rep: 60S ribosomal protein L6-2 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 233
Score = 82.2 bits (194), Expect = 2e-14
Identities = 43/94 (45%), Positives = 61/94 (64%)
Frame = +3
Query: 357 PLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILP 536
P+++ FYP ++ ++ R +K + +R ++ GTV I+LAGR GKRVV + L
Sbjct: 57 PVEKPPKFYPAED-VKKPLPNRRTAKPAK-LRASITPGTVLIILAGRFKGKRVVFLKQLA 114
Query: 537 SGLLLVTGPFAFNSCPLRRIPQRYVICTSTRISL 638
SGLLLVTGPF N PLRR+ Q YVI TST++ +
Sbjct: 115 SGLLLVTGPFKINGVPLRRVNQAYVIGTSTKVDI 148
>UniRef50_Q5CM54 Cluster: 60S ribosomal protein L6; n=2;
Cryptosporidium|Rep: 60S ribosomal protein L6 -
Cryptosporidium hominis
Length = 184
Score = 81.0 bits (191), Expect = 4e-14
Identities = 38/81 (46%), Positives = 55/81 (67%)
Frame = +3
Query: 402 RASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSC 581
R S R S ++R +L+ G VCILLAG + GKRVV++ LPSGL++VTGP+A N
Sbjct: 20 RKYSSRRKASVVAPKLRSSLQPGVVCILLAGPYKGKRVVMLKALPSGLVVVTGPYALNGV 79
Query: 582 PLRRIPQRYVICTSTRISLGQ 644
P+RR+ Y+I TST++ + +
Sbjct: 80 PVRRVNPAYIIATSTKVDVSK 100
>UniRef50_Q01IK4 Cluster: 60S ribosomal protein L6; n=17;
Eukaryota|Rep: 60S ribosomal protein L6 - Oryza sativa
(Rice)
Length = 222
Score = 80.6 bits (190), Expect = 5e-14
Identities = 44/88 (50%), Positives = 57/88 (64%), Gaps = 1/88 (1%)
Frame = +3
Query: 378 FYPTQE-KIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLV 554
FYP + K R S +P + ++R ++ GTV ILLAGR GKRVV + L SGLLLV
Sbjct: 53 FYPADDVKPRQPSTRKP---NPTKLRSSITPGTVLILLAGRFMGKRVVFLKQLKSGLLLV 109
Query: 555 TGPFAFNSCPLRRIPQRYVICTSTRISL 638
TGPF N P+RR+ Q YVI TST++ +
Sbjct: 110 TGPFKINGVPIRRVNQPYVIATSTKVDI 137
>UniRef50_Q7SH22 Cluster: 60S ribosomal protein L6; n=2;
Sordariaceae|Rep: 60S ribosomal protein L6 - Neurospora
crassa
Length = 207
Score = 78.2 bits (184), Expect = 3e-13
Identities = 42/81 (51%), Positives = 50/81 (61%), Gaps = 2/81 (2%)
Frame = +3
Query: 420 RPFSKHVRRIRPNLKI--GTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRR 593
RP K +R P + GTV ILLAGR GKRVVL+ L G+LLVTGPF N PLRR
Sbjct: 24 RPVRKTIRPWSPRSTLVPGTVLILLAGRFRGKRVVLLKALDQGVLLVTGPFKINGVPLRR 83
Query: 594 IPQRYVICTSTRISLGQLQTA 656
+ RYVI TS ++ L + A
Sbjct: 84 VNARYVIATSQKVDLAGIDEA 104
>UniRef50_Q4X638 Cluster: 60S ribosomal subunit protein L6e,
putative; n=5; Plasmodium|Rep: 60S ribosomal subunit
protein L6e, putative - Plasmodium chabaudi
Length = 241
Score = 74.1 bits (174), Expect = 4e-12
Identities = 44/115 (38%), Positives = 64/115 (55%), Gaps = 7/115 (6%)
Frame = +3
Query: 309 VVKQIGGEKNGGTRTVPLKRRKSFYPTQEK--IRASSGGRPFS---KHV--RRIRPNLKI 467
VV G +KN V ++K P + K I GR + K V R++R ++++
Sbjct: 17 VVPATGDKKNALKHYVIKGQKKILTPVRAKKTISKKHYGRKLASKKKFVVQRKMRSSIQV 76
Query: 468 GTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVICTSTRI 632
G V I+L G+H GKR ++ +L SGLL V GP+ N PL+R+ RY+I TST I
Sbjct: 77 GKVAIILTGKHMGKRCIIAKVLKSGLLAVVGPYEVNGVPLKRVDPRYLIVTSTNI 131
>UniRef50_P47991 Cluster: 60S ribosomal protein L6; n=2;
Caenorhabditis|Rep: 60S ribosomal protein L6 -
Caenorhabditis elegans
Length = 217
Score = 72.5 bits (170), Expect = 1e-11
Identities = 38/65 (58%), Positives = 46/65 (70%), Gaps = 1/65 (1%)
Frame = +3
Query: 447 IRPNLKIGTVCILLAGRHAGKRVVLVGILP-SGLLLVTGPFAFNSCPLRRIPQRYVICTS 623
+R L GTV I+LAGRH GKRVV + LP SGLLLVTGP N PLRRI Q +VI TS
Sbjct: 67 LRKTLTPGTVLIVLAGRHKGKRVVFLKQLPQSGLLLVTGPHKINGFPLRRIGQAFVIATS 126
Query: 624 TRISL 638
++++
Sbjct: 127 LKVNV 131
>UniRef50_Q02326 Cluster: 60S ribosomal protein L6-A; n=16;
Dikarya|Rep: 60S ribosomal protein L6-A - Saccharomyces
cerevisiae (Baker's yeast)
Length = 176
Score = 72.5 bits (170), Expect = 1e-11
Identities = 39/92 (42%), Positives = 59/92 (64%)
Frame = +3
Query: 363 KRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSG 542
++ +YP+++ + A R ++ +++R +L GTV ILLAGR GKRVV + L
Sbjct: 4 QKAPKWYPSED-VAALKKTRKAARP-QKLRASLVPGTVLILLAGRFRGKRVVYLKHLEDN 61
Query: 543 LLLVTGPFAFNSCPLRRIPQRYVICTSTRISL 638
LL++GPF N PLRR+ RYVI TST++S+
Sbjct: 62 TLLISGPFKVNGVPLRRVNARYVIATSTKVSV 93
>UniRef50_UPI0000DC20AA Cluster: UPI0000DC20AA related cluster; n=2;
Rattus norvegicus|Rep: UPI0000DC20AA UniRef100 entry -
Rattus norvegicus
Length = 261
Score = 70.5 bits (165), Expect = 6e-11
Identities = 51/159 (32%), Positives = 79/159 (49%)
Frame = +3
Query: 159 KKNLRKNPGTMILGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKN 338
K + +NP IL G R+S ++ +K Y + + V+K + G+KN
Sbjct: 44 KSHCTRNP---ILVRGTGRYSIKALYERK--YSAVKSKCEKKKKEKVVATVIKTVSGDKN 98
Query: 339 GGTRTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVV 518
GGT V L++ K + + + + S P KH + + N TV I++ G+H +RVV
Sbjct: 99 GGTGVVKLQKMKMYLGSCKAMAKS----PAFKHEKAVC-NSTPETVLIIITGQH--RRVV 151
Query: 519 LVGILPSGLLLVTGPFAFNSCPLRRIPQRYVICTSTRIS 635
+ L G LL+TGP A N L R Q+ V+ TST I+
Sbjct: 152 FLKQLSRGFLLITGPLALNLVLLYRTHQKSVVITSTTIN 190
>UniRef50_A0CYT3 Cluster: 60S ribosomal protein L6; n=5;
Oligohymenophorea|Rep: 60S ribosomal protein L6 -
Paramecium tetraurelia
Length = 208
Score = 67.7 bits (158), Expect = 4e-10
Identities = 39/80 (48%), Positives = 50/80 (62%)
Frame = +3
Query: 399 IRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNS 578
+R RP + +R+I P G V ILL+GR GKRVV + L SGLLLVTGPF N
Sbjct: 44 VRKRKAPRPAT--LRKIVP----GQVLILLSGRFQGKRVVFLKQLKSGLLLVTGPFKING 97
Query: 579 CPLRRIPQRYVICTSTRISL 638
PL+R+ YVI TST++ +
Sbjct: 98 VPLKRVNSAYVIPTSTKVDV 117
>UniRef50_UPI0000DA1E66 Cluster: PREDICTED: similar to ribosomal
protein L6; n=5; Eutheria|Rep: PREDICTED: similar to
ribosomal protein L6 - Rattus norvegicus
Length = 112
Score = 66.1 bits (154), Expect = 1e-09
Identities = 34/65 (52%), Positives = 44/65 (67%)
Frame = +3
Query: 471 TVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVICTSTRISLGQLQ 650
TV I+L GRH GKRVV + L SGLLLVTGP A N PL R+ Q VI T T++ + +++
Sbjct: 13 TVLIILTGRHRGKRVVFLKQLGSGLLLVTGPLALNRVPLCRMHQSVVISTFTKVDICKVK 72
Query: 651 TAXTL 665
T+ L
Sbjct: 73 TSKHL 77
>UniRef50_Q4Q4D3 Cluster: 60S ribosomal protein L6, putative; n=11;
Trypanosomatidae|Rep: 60S ribosomal protein L6, putative
- Leishmania major
Length = 195
Score = 65.7 bits (153), Expect = 2e-09
Identities = 31/71 (43%), Positives = 46/71 (64%), Gaps = 1/71 (1%)
Frame = +3
Query: 447 IRPNLKIGTVCILLAGRHAGKRVVLVGILP-SGLLLVTGPFAFNSCPLRRIPQRYVICTS 623
+R + G + I+LAGR G+R V++ LP +G L+V+GP +N P+RRI RYVI TS
Sbjct: 29 LRKSCAPGAIAIILAGRFRGRRAVILKQLPHNGPLVVSGPMKYNGVPIRRIDSRYVIATS 88
Query: 624 TRISLGQLQTA 656
T + + + TA
Sbjct: 89 TTVDISSVDTA 99
>UniRef50_A2EBD1 Cluster: 60S ribosomal protein L6, putative; n=7;
Trichomonas vaginalis G3|Rep: 60S ribosomal protein L6,
putative - Trichomonas vaginalis G3
Length = 151
Score = 54.8 bits (126), Expect = 3e-06
Identities = 27/63 (42%), Positives = 39/63 (61%)
Frame = +3
Query: 450 RPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVICTSTR 629
RP+LK+GTV I++ G H GKR V+V +G++ + GP P+ I Q Y+I TST
Sbjct: 53 RPSLKVGTVVIVVGGEHQGKRAVVVADQGAGIVKIAGPVV----PVNEISQDYLIATSTS 108
Query: 630 ISL 638
I +
Sbjct: 109 IEV 111
>UniRef50_A5C5P0 Cluster: 60S ribosomal protein L6; n=1; Vitis
vinifera|Rep: 60S ribosomal protein L6 - Vitis vinifera
(Grape)
Length = 249
Score = 54.0 bits (124), Expect = 5e-06
Identities = 25/44 (56%), Positives = 31/44 (70%)
Frame = +3
Query: 507 KRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVICTSTRISL 638
KRVV + L SGLLL+TG F N PLRR+ Q YVI TST++ +
Sbjct: 156 KRVVFLKQLSSGLLLITGSFKINGVPLRRVNQAYVIATSTKVDI 199
>UniRef50_Q8SR91 Cluster: 60S RIBOSOMAL PROTEIN L6; n=1;
Encephalitozoon cuniculi|Rep: 60S RIBOSOMAL PROTEIN L6 -
Encephalitozoon cuniculi
Length = 155
Score = 48.4 bits (110), Expect = 3e-04
Identities = 31/82 (37%), Positives = 45/82 (54%)
Frame = +3
Query: 393 EKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAF 572
EK +A + +P VRR +L G V ++L G A +RVV + L + L GP +
Sbjct: 10 EKYKARTARKP---RVRRT--DLVKGMVVVVLEGVFASRRVVYLKGLEDNIALCAGPKSI 64
Query: 573 NSCPLRRIPQRYVICTSTRISL 638
N PL RI +RY++ TST + L
Sbjct: 65 NGIPLFRIDERYLLATSTVLDL 86
>UniRef50_Q8U2L5 Cluster: 50S ribosomal protein L14e; n=5;
Archaea|Rep: 50S ribosomal protein L14e - Pyrococcus
furiosus
Length = 83
Score = 40.7 bits (91), Expect = 0.051
Identities = 18/53 (33%), Positives = 33/53 (62%)
Frame = +3
Query: 453 PNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYV 611
P + +G + +++AGR AG++VV+V I+ +LVTG N RR+ +++
Sbjct: 2 PAIDVGRIAVVIAGRRAGQKVVVVDIIDKNFVLVTGA-GLNKVKRRRMNIKHI 53
>UniRef50_Q7QVA1 Cluster: 60S ribosomal protein L27; n=1; Giardia
lamblia ATCC 50803|Rep: 60S ribosomal protein L27 -
Giardia lamblia ATCC 50803
Length = 135
Score = 39.9 bits (89), Expect = 0.089
Identities = 17/29 (58%), Positives = 22/29 (75%)
Frame = +3
Query: 450 RPNLKIGTVCILLAGRHAGKRVVLVGILP 536
+P +K G VCI+L GRHAGK+ V+V LP
Sbjct: 3 QPIIKPGLVCIVLQGRHAGKKAVIVEALP 31
>UniRef50_P54054 Cluster: 50S ribosomal protein L14e; n=8;
Euryarchaeota|Rep: 50S ribosomal protein L14e -
Methanococcus jannaschii
Length = 80
Score = 39.5 bits (88), Expect = 0.12
Identities = 18/48 (37%), Positives = 27/48 (56%)
Frame = +3
Query: 453 PNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRI 596
P +++G VCI AGR AGK V+V IL ++V G C ++ +
Sbjct: 2 PAIEVGRVCIKTAGREAGKVCVIVDILDKNFVIVDGLVKRRRCNIKHL 49
>UniRef50_A7QIH5 Cluster: Chromosome chr12 scaffold_103, whole
genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr12 scaffold_103, whole genome shotgun
sequence - Vitis vinifera (Grape)
Length = 345
Score = 39.1 bits (87), Expect = 0.16
Identities = 26/69 (37%), Positives = 39/69 (56%)
Frame = +3
Query: 378 FYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVT 557
FYP + ++ + +K ++ +R ++ GTV I+LAGR VV + L SGLLL+T
Sbjct: 207 FYPADD-VKKPLINKHKAKPIK-LRASITPGTVLIILAGR-----VVFLKQLSSGLLLIT 259
Query: 558 GPFAFNSCP 584
G F N P
Sbjct: 260 GSFKINDVP 268
>UniRef50_A0N0S1 Cluster: 60S ribosomal protein L6; n=1;
Strongyloides papillosus|Rep: 60S ribosomal protein L6 -
Strongyloides papillosus
Length = 127
Score = 38.3 bits (85), Expect = 0.27
Identities = 16/41 (39%), Positives = 26/41 (63%)
Frame = +3
Query: 543 LLLVTGPFAFNSCPLRRIPQRYVICTSTRISLGQLQTAXTL 665
L GPF+ N P+RRI Q++V+ TST+I + ++ T+
Sbjct: 10 LFTFLGPFSINGVPVRRIAQKFVLPTSTKIDVSGVKIPATM 50
>UniRef50_Q8ZYB4 Cluster: 50S ribosomal protein L14e; n=14;
Archaea|Rep: 50S ribosomal protein L14e - Pyrobaculum
aerophilum
Length = 103
Score = 37.9 bits (84), Expect = 0.36
Identities = 17/60 (28%), Positives = 32/60 (53%)
Frame = +3
Query: 459 LKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVICTSTRISL 638
+ IG V + + GR AG++ V+V I+ +++TGP RR+ ++ T +I +
Sbjct: 5 IDIGRVVVKVLGREAGRKAVVVDIVDENYVVITGPKPITGVKRRRVNINHIEPTDKKIDI 64
>UniRef50_Q4ZTN3 Cluster: Sensor protein; n=5; Pseudomonas|Rep:
Sensor protein - Pseudomonas syringae pv. syringae
(strain B728a)
Length = 676
Score = 33.9 bits (74), Expect = 5.9
Identities = 19/53 (35%), Positives = 31/53 (58%)
Frame = +3
Query: 417 GRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFN 575
GR ++ R++RP LK+ + + G +A V G L +G+ L+T PFAF+
Sbjct: 617 GRQLAEIARQLRPELKV----LFITG-YAEHAAVRGGFLDTGMQLITKPFAFD 664
>UniRef50_A2RKU3 Cluster: Cation-transporting ATPase; n=2;
Lactococcus lactis subsp. cremoris|Rep:
Cation-transporting ATPase - Lactococcus lactis subsp.
cremoris (strain MG1363)
Length = 841
Score = 33.9 bits (74), Expect = 5.9
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = +3
Query: 510 RVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVICTSTRISLGQL 647
+++++GI+P +L++ F F+S L IPQR T ++ L
Sbjct: 215 KIIVIGIIPISILVLLNQFVFSSLDLSVIPQRKTAIIGTAATITSL 260
>UniRef50_Q98RL7 Cluster: 60S ribosomal protein L6B; n=1; Guillardia
theta|Rep: 60S ribosomal protein L6B - Guillardia theta
(Cryptomonas phi)
Length = 169
Score = 33.9 bits (74), Expect = 5.9
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = +3
Query: 456 NLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVI 614
+ KIG + I+ + GK+ V +G G LL++G FN +I +YV+
Sbjct: 41 DFKIGDILIIKKRNNYGKKCVFLGHTDDGNLLLSGIMKFNGIGYLKIHWKYVV 93
>UniRef50_A7ET80 Cluster: Putative uncharacterized protein; n=1;
Sclerotinia sclerotiorum 1980|Rep: Putative
uncharacterized protein - Sclerotinia sclerotiorum 1980
Length = 752
Score = 33.9 bits (74), Expect = 5.9
Identities = 18/44 (40%), Positives = 22/44 (50%)
Frame = +3
Query: 333 KNGGTRTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLK 464
K R LK SF P + + ASS GRP K +R+R LK
Sbjct: 128 KEDHNREEELKAMVSFMPHRPAVDASSSGRPMKKDSKRMRNGLK 171
>UniRef50_Q5KML3 Cluster: VpsB, putative; n=2; Basidiomycota|Rep:
VpsB, putative - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 686
Score = 33.5 bits (73), Expect = 7.7
Identities = 16/45 (35%), Positives = 26/45 (57%)
Frame = -2
Query: 532 RIPTSTTLLPACLPARRMQTVPIFRLGRILRTCLLNGRPPDEARI 398
R+P+ L A L A R Q P ++ +++ T + NG PP+ AR+
Sbjct: 397 RVPSPNKLRLAILYALRYQKSPSAQIPQVVSTLISNGVPPERARL 441
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 723,416,997
Number of Sequences: 1657284
Number of extensions: 13798272
Number of successful extensions: 33477
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 32400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33458
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 84031265255
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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