Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP24_F_J22
(880 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ... 194 1e-50
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 154 1e-38
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit... 140 3e-34
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ... 138 7e-34
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni... 132 8e-32
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C... 118 1e-27
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C... 104 2e-23
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 99 7e-22
SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60... 56 9e-09
SPAC10F6.12c |mam4||protein-S isoprenylcysteine O-methyltransfer... 27 2.7
SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb... 26 6.1
>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
Cct4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 527
Score = 194 bits (474), Expect = 1e-50
Identities = 91/153 (59%), Positives = 121/153 (79%)
Frame = +3
Query: 201 YKDKSKPTDIRLSNINAAKAVADAIRTSLGPRGMDKMIQAANGEVTITNDGATILKQMSV 380
++D+ KP ++RLSNI AA++VADAIRTSLGP+GMDKMIQ GEV +TNDGATILK +SV
Sbjct: 11 FQDREKPQEVRLSNIMAARSVADAIRTSLGPKGMDKMIQTGKGEVILTNDGATILKHLSV 70
Query: 381 IHPAAKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQKGIHPTVISDGFXKALQL 560
+HPAAKMLV+LS AQD+EAGDGTTSVV++AG++L AEKLL+KGIHPTVI++ F +A
Sbjct: 71 LHPAAKMLVDLSAAQDVEAGDGTTSVVILAGSMLACAEKLLKKGIHPTVIAESFQRAAGF 130
Query: 561 ALQVVENMSTPVDLNNEXXXXXXXXTSLNSKVV 659
+ ++ + ++L++ TSLNSK+V
Sbjct: 131 TVDCMKENALAIELSDRESLLRAATTSLNSKIV 163
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 154 bits (374), Expect = 1e-38
Identities = 79/143 (55%), Positives = 105/143 (73%), Gaps = 2/143 (1%)
Frame = +3
Query: 237 SNINAAKAVADAIRTSLGPRGMDKMIQAANGEVTITNDGATILKQMSVIHPAAKMLVELS 416
S+I A K VA+ +RTSLGPRG+DK++ + +GE+T+TNDGATIL QM V H AK+LV+LS
Sbjct: 38 SHILATKTVANIVRTSLGPRGLDKILISPDGEITVTNDGATILDQMEVEHQIAKLLVQLS 97
Query: 417 RAQDIEAGDGTTSVVVIAGALLDSAEKLLQKGIHPTVISDGFXKALQLALQVVENMSTPV 596
++QD E GDGTT VVV+AGALL+ AE L+ KGIHP I+DG+ KA Q+A++ ++ +S V
Sbjct: 98 KSQDDEIGDGTTGVVVLAGALLEQAEALIDKGIHPIRIADGYEKACQVAVKHLDAISDVV 157
Query: 597 DLN--NEXXXXXXXXTSLNSKVV 659
D + N TSL SKVV
Sbjct: 158 DFSPENTTNLFRSAKTSLGSKVV 180
>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
Cct3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 140 bits (338), Expect = 3e-34
Identities = 67/143 (46%), Positives = 98/143 (68%)
Frame = +3
Query: 231 RLSNINAAKAVADAIRTSLGPRGMDKMIQAANGEVTITNDGATILKQMSVIHPAAKMLVE 410
++SNI AAKAVAD IRT LGPR M KM+ G V +TNDG IL+++ V HPAAK ++E
Sbjct: 21 QMSNIQAAKAVADVIRTCLGPRAMLKMLLDPVGSVLLTNDGHAILREIEVAHPAAKSMIE 80
Query: 411 LSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQKGIHPTVISDGFXKALQLALQVVENMST 590
L+R QD E GDGTTSV+++AG +L +A LL + IHP V+ F +AL+ AL +++ ++
Sbjct: 81 LARTQDEEVGDGTTSVIILAGEILAAASPLLDRKIHPVVMIRSFKQALEDALSIIDEITL 140
Query: 591 PVDLNNEXXXXXXXXTSLNSKVV 659
PV++++ T + +K+V
Sbjct: 141 PVNVDDNAEMFRLIRTCIGTKLV 163
>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
Cct7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 558
Score = 138 bits (335), Expect = 7e-34
Identities = 73/162 (45%), Positives = 105/162 (64%), Gaps = 4/162 (2%)
Frame = +3
Query: 186 LILQLYKDKSKPTDIRLSNINAAKAVADAIRTSLGPRGMDKMIQAANGEVTITNDGATIL 365
++L+ D S+ LSNINA AV D IRT+LGP G DK++ GEV I+NDGATI+
Sbjct: 11 IVLKEGTDDSQGRGQLLSNINACVAVQDTIRTTLGPLGADKLMVDDRGEVVISNDGATIM 70
Query: 366 KQMSVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQKGIHPTVISDGFX 545
K + ++HPAAK LV+++RAQD E GDGTTSVVV AG LL A ++ G+ +I G+
Sbjct: 71 KLLDIVHPAAKTLVDIARAQDAEVGDGTTSVVVFAGELLREARTFVEDGVSSHLIIRGYR 130
Query: 546 KALQLALQVVENMSTPVDLNNE----XXXXXXXXTSLNSKVV 659
KA QLA+ ++ ++ +DL++E T++NSK++
Sbjct: 131 KAAQLAVNKIKEIAIHLDLSDEGKLRDLLTKCASTAMNSKLI 172
>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
Cct1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 132 bits (318), Expect = 8e-32
Identities = 70/166 (42%), Positives = 105/166 (63%), Gaps = 1/166 (0%)
Frame = +3
Query: 192 LQLYKDKSKPTDIRLSNINAAKAVADAIRTSLGPRGMDKMIQAANGEVTITNDGATILKQ 371
L L +K D+R N+ A A+A+ +++SLGP G+DKM+ G+VT+TNDGATIL
Sbjct: 10 LFLSGEKISGEDVRNQNVLATTAIANVVKSSLGPVGLDKMLVDDIGDVTVTNDGATILSL 69
Query: 372 MSVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQKGIHPTVISDGFXKA 551
+ V HPA K+LVEL++ QD E GDGTTSVV+IA LL A +L++ IHPT I G+ A
Sbjct: 70 LDVEHPAGKVLVELAQQQDKEVGDGTTSVVIIAAELLRRANELVKNKIHPTTIITGYRLA 129
Query: 552 LQLALQ-VVENMSTPVDLNNEXXXXXXXXTSLNSKVVFTTLNYXGT 686
++ A++ + + +S VD + TS++SK++ ++ T
Sbjct: 130 IREAVKFMTDVLSCSVDSLGKESLINVAKTSMSSKIIGNDSDFFST 175
>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
Cct2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 118 bits (284), Expect = 1e-27
Identities = 64/155 (41%), Positives = 99/155 (63%), Gaps = 6/155 (3%)
Frame = +3
Query: 231 RLSNINAAKAVADAIRTSLGPRGMDKMIQA-ANGEVTITNDGATILKQMSVIHPAAKMLV 407
RLS+ A AV D ++++LGP+GMDK++Q+ ++G++ +TNDGATILK +++ + AAK+LV
Sbjct: 22 RLSSFVGAIAVGDLVKSTLGPKGMDKILQSNSSGDIVVTNDGATILKSIALDNAAAKVLV 81
Query: 408 ELSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQKGIHPTVISDGFXKALQLALQV----- 572
+S+ QD E GDGTTSV V A LL AE ++ IHP VI DG+ A + A+
Sbjct: 82 NISKVQDDEVGDGTTSVCVFAAELLRQAEIMVNAKIHPQVIIDGYRIATKTAIDALRASS 141
Query: 573 VENMSTPVDLNNEXXXXXXXXTSLNSKVVFTTLNY 677
++N S P ++ T+L+SK++ N+
Sbjct: 142 IDNSSDPAKFRSD--LENIARTTLSSKILSQNKNH 174
>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
Cct6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 104 bits (249), Expect = 2e-23
Identities = 51/139 (36%), Positives = 84/139 (60%)
Frame = +3
Query: 240 NINAAKAVADAIRTSLGPRGMDKMIQAANGEVTITNDGATILKQMSVIHPAAKMLVELSR 419
NI+AA + D ++++LGP G KM+ G + +T DG +L +M + +P A + + +
Sbjct: 21 NISAAIGLQDVLKSNLGPTGTTKMLVDGAGAIKLTKDGKVLLTEMQIQNPTASCIAKAAT 80
Query: 420 AQDIEAGDGTTSVVVIAGALLDSAEKLLQKGIHPTVISDGFXKALQLALQVVENMSTPVD 599
AQD GDGTTSV ++ G LL AE +++G+HP++ISDGF A AL +++ T +
Sbjct: 81 AQDDATGDGTTSVCLLVGELLKQAELYIREGLHPSLISDGFNLAKNEALTFLDSFKTDFE 140
Query: 600 LNNEXXXXXXXXTSLNSKV 656
++ E TSL++K+
Sbjct: 141 VDRE-VLLNVAKTSLSTKI 158
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 99.1 bits (236), Expect = 7e-22
Identities = 48/134 (35%), Positives = 81/134 (60%)
Frame = +3
Query: 183 KLILQLYKDKSKPTDIRLSNINAAKAVADAIRTSLGPRGMDKMIQAANGEVTITNDGATI 362
+L + Y+ D + N NA + +++ RTSLGP G +K++ + +TND ATI
Sbjct: 12 QLFREGYRIMQGVEDAVIRNCNAIRELSEITRTSLGPNGKNKIVVNHLQQTFLTNDAATI 71
Query: 363 LKQMSVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQKGIHPTVISDGF 542
++++ VIHPAAK++V+ ++ Q+ E GD VVV G LL AE +++ G+ P I+ G+
Sbjct: 72 IRELEVIHPAAKLVVDATQQQENELGDAANFVVVFTGELLAKAENMIRMGLTPLEIAKGY 131
Query: 543 XKALQLALQVVENM 584
AL ++V+E +
Sbjct: 132 EMALSHTMEVLEEI 145
>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
Length = 582
Score = 55.6 bits (128), Expect = 9e-09
Identities = 33/140 (23%), Positives = 66/140 (47%), Gaps = 4/140 (2%)
Frame = +3
Query: 204 KDKSKPTDIRLSNINAAKAVADAIRTSLGPRGMDKMIQAANGEVTITNDGATILKQMSV- 380
KD D R S + +A A+ +LGP+G + +I G IT DG T+ + +S+
Sbjct: 35 KDLKFGVDARASLLTGVDTLARAVSVTLGPKGRNVLIDQPFGSPKITKDGVTVARSVSLK 94
Query: 381 ---IHPAAKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQKGIHPTVISDGFXKA 551
+ A+++ +++ + AGDGTT+ V+ A+ + + G +P + G A
Sbjct: 95 DKFENLGARLVQDVASKTNEVAGDGTTTATVLTRAIFSETVRNVAAGCNPMDLRRGIQLA 154
Query: 552 LQLALQVVENMSTPVDLNNE 611
+ ++ ++ + + E
Sbjct: 155 VDNVVEFLQANKRDITTSEE 174
>SPAC10F6.12c |mam4||protein-S isoprenylcysteine O-methyltransferase
Mam4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 236
Score = 27.5 bits (58), Expect = 2.7
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +2
Query: 374 ECYSSSCKNVGRIISCSRY*SW*WNNISSCYCWCVVGF 487
EC S K+ ++I+C R+ S+ N I S Y +GF
Sbjct: 87 ECLLSGGKSFAKVINCLRFPSFLINFIFSVYQTSALGF 124
>SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated
membrane proteins, ESCRT 0 complex|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 610
Score = 26.2 bits (55), Expect = 6.1
Identities = 10/20 (50%), Positives = 13/20 (65%), Gaps = 2/20 (10%)
Frame = -2
Query: 735 TTDNRFHYCSNC--LHCNRC 682
T NR H+C NC + CN+C
Sbjct: 184 TFTNRKHHCRNCGGVFCNQC 203
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,794,652
Number of Sequences: 5004
Number of extensions: 51059
Number of successful extensions: 137
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -