Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_J21
         (880 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0201 - 1347868-1347925,1348040-1348135,1348447-1348523,134...    32   0.53 
02_04_0233 - 21135743-21135867,21135970-21136340,21136486-211367...    28   8.6  

>02_01_0201 -
           1347868-1347925,1348040-1348135,1348447-1348523,
           1349385-1349453,1349576-1349629,1350295-1350350,
           1350487-1350694,1350978-1351066,1351163-1351187
          Length = 243

 Score = 32.3 bits (70), Expect = 0.53
 Identities = 16/46 (34%), Positives = 28/46 (60%)
 Frame = -3

Query: 209 SKLICANISFQVSLSDIHPVFWLFASVLNFLDFDLRIQHWLSNSIL 72
           SKL   ++S  V + D +P+FW  A+ L F DF   + H++++ +L
Sbjct: 4   SKLYSDDVSLAVVVVDTNPLFWATAA-LPFADFFAHLIHYVNSLLL 48


>02_04_0233 -
           21135743-21135867,21135970-21136340,21136486-21136757,
           21137289-21137397,21137846-21138247,21138376-21138419,
           21138539-21138759,21140163-21140274,21140620-21140754
          Length = 596

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +3

Query: 414 KGGKAEKFLEEVVKGGITLQEPEVYKKPNPWDQFRPEKPWEV 539
           KGG+  +F    + GG  L  P +   P     F+P +PW V
Sbjct: 109 KGGEVSRF----ILGGADLMFPGISIPPEGLPSFQPGQPWSV 146


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,757,911
Number of Sequences: 37544
Number of extensions: 359164
Number of successful extensions: 819
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 819
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)