Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_J21
         (880 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR533491-1|CAG38522.1|  180|Homo sapiens MRPL18 protein.               58   6e-08
BC001623-1|AAH01623.1|  180|Homo sapiens mitochondrial ribosomal...    58   6e-08
AL139045-3|CAI19751.1|  180|Homo sapiens mitochondrial ribosomal...    58   6e-08
AL135914-8|CAI21852.1|  180|Homo sapiens mitochondrial ribosomal...    58   6e-08

>CR533491-1|CAG38522.1|  180|Homo sapiens MRPL18 protein.
          Length = 180

 Score = 57.6 bits (133), Expect = 6e-08
 Identities = 29/74 (39%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
 Frame = +3

Query: 267 VEVKTSEWALQKQLYSPTDTCAYISLGKVLAQRCLEFGITEMYCDLQPQKGG--KAEKFL 440
           V   T EWA++K LYS  +  A  S+G+VLAQRCLE GI  M     P +      ++  
Sbjct: 103 VSASTREWAIKKHLYSTRNVVACESIGRVLAQRCLEAGINFMVYQPTPWEAASDSMKRLQ 162

Query: 441 EEVVKGGITLQEPE 482
             + +GG+ L+EP+
Sbjct: 163 SAMTEGGVVLREPQ 176



 Score = 50.0 bits (114), Expect = 1e-05
 Identities = 22/50 (44%), Positives = 30/50 (60%)
 Frame = +2

Query: 98  EFVNRNPRNLERMRIARKPDGYHLEKPGRKYWHKLVLTPGNRSIIAKVIH 247
           EF NRNPRNLE + +ARK  G+    P R++WH+L +      + A V H
Sbjct: 47  EFTNRNPRNLELLSVARKERGWRTVFPSREFWHRLRVIRTQHHVEALVEH 96


>BC001623-1|AAH01623.1|  180|Homo sapiens mitochondrial ribosomal
           protein L18 protein.
          Length = 180

 Score = 57.6 bits (133), Expect = 6e-08
 Identities = 29/74 (39%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
 Frame = +3

Query: 267 VEVKTSEWALQKQLYSPTDTCAYISLGKVLAQRCLEFGITEMYCDLQPQKGG--KAEKFL 440
           V   T EWA++K LYS  +  A  S+G+VLAQRCLE GI  M     P +      ++  
Sbjct: 103 VSASTREWAIKKHLYSTRNVVACESIGRVLAQRCLEAGINFMVYQPTPWEAASDSMKRLQ 162

Query: 441 EEVVKGGITLQEPE 482
             + +GG+ L+EP+
Sbjct: 163 SAMTEGGVVLREPQ 176



 Score = 50.0 bits (114), Expect = 1e-05
 Identities = 22/50 (44%), Positives = 30/50 (60%)
 Frame = +2

Query: 98  EFVNRNPRNLERMRIARKPDGYHLEKPGRKYWHKLVLTPGNRSIIAKVIH 247
           EF NRNPRNLE + +ARK  G+    P R++WH+L +      + A V H
Sbjct: 47  EFTNRNPRNLELLSVARKERGWRTVFPSREFWHRLRVIRTQHHVEALVEH 96


>AL139045-3|CAI19751.1|  180|Homo sapiens mitochondrial ribosomal
           protein L18 protein.
          Length = 180

 Score = 57.6 bits (133), Expect = 6e-08
 Identities = 29/74 (39%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
 Frame = +3

Query: 267 VEVKTSEWALQKQLYSPTDTCAYISLGKVLAQRCLEFGITEMYCDLQPQKGG--KAEKFL 440
           V   T EWA++K LYS  +  A  S+G+VLAQRCLE GI  M     P +      ++  
Sbjct: 103 VSASTREWAIKKHLYSTRNVVACESIGRVLAQRCLEAGINFMVYQPTPWEAASDSMKRLQ 162

Query: 441 EEVVKGGITLQEPE 482
             + +GG+ L+EP+
Sbjct: 163 SAMTEGGVVLREPQ 176



 Score = 50.0 bits (114), Expect = 1e-05
 Identities = 22/50 (44%), Positives = 30/50 (60%)
 Frame = +2

Query: 98  EFVNRNPRNLERMRIARKPDGYHLEKPGRKYWHKLVLTPGNRSIIAKVIH 247
           EF NRNPRNLE + +ARK  G+    P R++WH+L +      + A V H
Sbjct: 47  EFTNRNPRNLELLSVARKERGWRTVFPSREFWHRLRVIRTQHHVEALVEH 96


>AL135914-8|CAI21852.1|  180|Homo sapiens mitochondrial ribosomal
           protein L18 protein.
          Length = 180

 Score = 57.6 bits (133), Expect = 6e-08
 Identities = 29/74 (39%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
 Frame = +3

Query: 267 VEVKTSEWALQKQLYSPTDTCAYISLGKVLAQRCLEFGITEMYCDLQPQKGG--KAEKFL 440
           V   T EWA++K LYS  +  A  S+G+VLAQRCLE GI  M     P +      ++  
Sbjct: 103 VSASTREWAIKKHLYSTRNVVACESIGRVLAQRCLEAGINFMVYQPTPWEAASDSMKRLQ 162

Query: 441 EEVVKGGITLQEPE 482
             + +GG+ L+EP+
Sbjct: 163 SAMTEGGVVLREPQ 176



 Score = 50.0 bits (114), Expect = 1e-05
 Identities = 22/50 (44%), Positives = 30/50 (60%)
 Frame = +2

Query: 98  EFVNRNPRNLERMRIARKPDGYHLEKPGRKYWHKLVLTPGNRSIIAKVIH 247
           EF NRNPRNLE + +ARK  G+    P R++WH+L +      + A V H
Sbjct: 47  EFTNRNPRNLELLSVARKERGWRTVFPSREFWHRLRVIRTQHHVEALVEH 96


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,462,914
Number of Sequences: 237096
Number of extensions: 2123676
Number of successful extensions: 3696
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3696
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11215125244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)