Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP24_F_J21
(880 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L16560-1|AAA27999.1| 170|Caenorhabditis elegans Hypothetical pr... 46 3e-05
AF067220-1|AAK84500.1| 1014|Caenorhabditis elegans Hypothetical ... 31 1.1
Z68760-14|CAA92998.2| 908|Caenorhabditis elegans Hypothetical p... 30 1.9
Z68748-13|CAA92957.2| 908|Caenorhabditis elegans Hypothetical p... 30 1.9
U58760-5|AAK31464.1| 1076|Caenorhabditis elegans Hypothetical pr... 29 3.3
AF068718-5|AAC17768.1| 320|Caenorhabditis elegans Hypothetical ... 29 3.3
AC084154-11|AAK29874.1| 350|Caenorhabditis elegans Hypothetical... 29 3.3
AC025716-11|AAK39605.1| 823|Caenorhabditis elegans Yeast mcm (l... 29 5.8
AF039046-2|AAB94218.2| 516|Caenorhabditis elegans Hypothetical ... 28 7.7
>L16560-1|AAA27999.1| 170|Caenorhabditis elegans Hypothetical
protein D2007.4 protein.
Length = 170
Score = 46.4 bits (105), Expect = 3e-05
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Frame = +3
Query: 267 VEVKTSEWALQKQLYSPTDTCAYISLGKVLAQRCLEFGITEMYCDLQPQKGGKAE---KF 437
+ T E ++ QLYS TDT A +++G+VLA RCL+ GI + K++ F
Sbjct: 66 ISASTKEPSIASQLYSKTDTSAALNIGRVLALRCLQSGIHFAMPGATKEAIEKSQHQTHF 125
Query: 438 LEEVVKGGITLQEP 479
+ + + G+TL+EP
Sbjct: 126 FKALEEEGLTLKEP 139
Score = 38.7 bits (86), Expect = 0.005
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +2
Query: 101 FVNRNPRNLERMRIARKPDGYHLEK--PGRKYWHKLVLTPGNRSIIAKVIHFLNG 259
FVNRNPRN E M GY EK R Y +K+ L G +++H+ +G
Sbjct: 9 FVNRNPRNNELMGRQAPNTGYQFEKDRAARSYIYKVELVEGKSHREGRLVHYQDG 63
>AF067220-1|AAK84500.1| 1014|Caenorhabditis elegans Hypothetical
protein C33E10.6 protein.
Length = 1014
Score = 31.1 bits (67), Expect = 1.1
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -2
Query: 639 NFLFYSFNPTINKAKTSKLLSRTH*NNKYLIHHE 538
+F FY N +N KT KL++ KY+IH++
Sbjct: 688 DFPFYPQNTKVNNQKTCKLMNTLFDKEKYVIHYK 721
>Z68760-14|CAA92998.2| 908|Caenorhabditis elegans Hypothetical
protein F36H1.6 protein.
Length = 908
Score = 30.3 bits (65), Expect = 1.9
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 408 PQKGGKAEKFLEEVVKGGITLQEPEVYKKPNP 503
P K G+ + E K G+ +Q+P ++K NP
Sbjct: 33 PDKNGREDLLAVEAAKDGVPVQKPSRWRKKNP 64
>Z68748-13|CAA92957.2| 908|Caenorhabditis elegans Hypothetical
protein F36H1.6 protein.
Length = 908
Score = 30.3 bits (65), Expect = 1.9
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 408 PQKGGKAEKFLEEVVKGGITLQEPEVYKKPNP 503
P K G+ + E K G+ +Q+P ++K NP
Sbjct: 33 PDKNGREDLLAVEAAKDGVPVQKPSRWRKKNP 64
>U58760-5|AAK31464.1| 1076|Caenorhabditis elegans Hypothetical
protein C27A2.1 protein.
Length = 1076
Score = 29.5 bits (63), Expect = 3.3
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = -2
Query: 183 LPGFSK*YPSGFLAIRIRSKFLGFRFTNSTLAVELNLVICGTNGTSKS 40
LP K YP G L + FL + T+ LN+++ G NG+ KS
Sbjct: 10 LPANYKDYPDGSLLRVVFHNFLTYEHTSFLPTASLNMIL-GHNGSGKS 56
>AF068718-5|AAC17768.1| 320|Caenorhabditis elegans Hypothetical
protein R01B10.4 protein.
Length = 320
Score = 29.5 bits (63), Expect = 3.3
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = -3
Query: 203 LICANISFQVSLSDIHPVFWLFASVLNFLDFDLRIQHWLSNSILSFVE 60
+I AN+S + + D PVFW+F S F + I W S+ + + +
Sbjct: 259 IIWANLSTALEILDFTPVFWIFDSHSLFHLATIPIPIWWSDFLALYYD 306
>AC084154-11|AAK29874.1| 350|Caenorhabditis elegans Hypothetical
protein Y22D7AR.1 protein.
Length = 350
Score = 29.5 bits (63), Expect = 3.3
Identities = 12/29 (41%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = +3
Query: 447 VVKGGITLQEPEVYKKPNPWDQFRPE-KP 530
++KGG+ EP++ KPNP + +P+ KP
Sbjct: 145 ILKGGVLKNEPKLKSKPNPKPEPKPKPKP 173
>AC025716-11|AAK39605.1| 823|Caenorhabditis elegans Yeast mcm
(licensing factor) relatedprotein 4 protein.
Length = 823
Score = 28.7 bits (61), Expect = 5.8
Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = -2
Query: 105 TNST-LAVELNLVICGTNGTSKS*GIPY 25
TN T L E+N+++CG GTSKS + Y
Sbjct: 454 TNKTKLRSEINILLCGDPGTSKSQMLQY 481
>AF039046-2|AAB94218.2| 516|Caenorhabditis elegans Hypothetical
protein R09B5.11 protein.
Length = 516
Score = 28.3 bits (60), Expect = 7.7
Identities = 25/69 (36%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Frame = -3
Query: 677 LICSTKFERCEIEISYF----IHSILQLTRLKLANYYLELIKITNILFIMNF--PWLFRP 516
LI KF R + I+ I SIL + L L+N N+LFI++F + F P
Sbjct: 364 LIDHPKFGRKRLHIAGLSGMCISSILIVITLTLSNAGYHWASYMNVLFILSFVVTFAFGP 423
Query: 515 ELIPRVWFF 489
IP WFF
Sbjct: 424 GPIP--WFF 430
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,667,118
Number of Sequences: 27780
Number of extensions: 340928
Number of successful extensions: 897
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 896
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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