Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP24_F_J20
(965 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 35 0.100
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 35 0.100
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 35 0.100
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 33 0.40
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 33 0.40
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 30 2.8
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 30 2.8
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 30 2.8
AF099925-3|AAC69507.1| 394|Caenorhabditis elegans Collagen prot... 29 3.7
Z73102-2|CAB63428.1| 341|Caenorhabditis elegans Hypothetical pr... 28 8.7
Z73102-1|CAA97419.1| 298|Caenorhabditis elegans Hypothetical pr... 28 8.7
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 28 8.7
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 28 8.7
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 34.7 bits (76), Expect = 0.100
Identities = 19/58 (32%), Positives = 19/58 (32%)
Frame = +3
Query: 744 GXXPXXXXXXXXSPXPGVRXXPPPXXGXXXPXXPPXXXPXPXXPXXPGKXXXXXXPPP 917
G P P PG PP G P PP P P P PG PPP
Sbjct: 733 GGLPPITGGPPPPPPPG--GLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPP 788
Score = 29.1 bits (62), Expect = 5.0
Identities = 30/118 (25%), Positives = 33/118 (27%), Gaps = 2/118 (1%)
Frame = +3
Query: 537 IXLRPP*RASXKXXRSXSXGGETPTGIIXDXXXFSPLESPPRCAPPXXXPXPXXXXXXXX 716
I L PP + + S S GG + I P PP P P P
Sbjct: 683 IPLPPPTKMNLSAP-STSAGGSSALPPITGGPP-PPPGLPPITGGPPPPPPPGGLPPITG 740
Query: 717 XXXXXXXXGGXXPXXXXXXXXSPXPG--VRXXPPPXXGXXXPXXPPXXXPXPXXPXXP 884
GG P P PG PPP G PP P P P
Sbjct: 741 GPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAPMAP 798
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 34.7 bits (76), Expect = 0.100
Identities = 19/58 (32%), Positives = 19/58 (32%)
Frame = +3
Query: 744 GXXPXXXXXXXXSPXPGVRXXPPPXXGXXXPXXPPXXXPXPXXPXXPGKXXXXXXPPP 917
G P P PG PP G P PP P P P PG PPP
Sbjct: 733 GGLPPITGGPPPPPPPG--GLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPP 788
Score = 29.1 bits (62), Expect = 5.0
Identities = 30/118 (25%), Positives = 33/118 (27%), Gaps = 2/118 (1%)
Frame = +3
Query: 537 IXLRPP*RASXKXXRSXSXGGETPTGIIXDXXXFSPLESPPRCAPPXXXPXPXXXXXXXX 716
I L PP + + S S GG + I P PP P P P
Sbjct: 683 IPLPPPTKMNLSAP-STSAGGSSALPPITGGPP-PPPGLPPITGGPPPPPPPGGLPPITG 740
Query: 717 XXXXXXXXGGXXPXXXXXXXXSPXPG--VRXXPPPXXGXXXPXXPPXXXPXPXXPXXP 884
GG P P PG PPP G PP P P P
Sbjct: 741 GPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAPMAP 798
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 34.7 bits (76), Expect = 0.100
Identities = 19/58 (32%), Positives = 19/58 (32%)
Frame = +3
Query: 744 GXXPXXXXXXXXSPXPGVRXXPPPXXGXXXPXXPPXXXPXPXXPXXPGKXXXXXXPPP 917
G P P PG PP G P PP P P P PG PPP
Sbjct: 316 GGLPPITGGPPPPPPPG--GLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPP 371
Score = 29.1 bits (62), Expect = 5.0
Identities = 30/118 (25%), Positives = 33/118 (27%), Gaps = 2/118 (1%)
Frame = +3
Query: 537 IXLRPP*RASXKXXRSXSXGGETPTGIIXDXXXFSPLESPPRCAPPXXXPXPXXXXXXXX 716
I L PP + + S S GG + I P PP P P P
Sbjct: 266 IPLPPPTKMNLSAP-STSAGGSSALPPITGGPP-PPPGLPPITGGPPPPPPPGGLPPITG 323
Query: 717 XXXXXXXXGGXXPXXXXXXXXSPXPG--VRXXPPPXXGXXXPXXPPXXXPXPXXPXXP 884
GG P P PG PPP G PP P P P
Sbjct: 324 GPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAPMAP 381
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 32.7 bits (71), Expect = 0.40
Identities = 21/57 (36%), Positives = 22/57 (38%), Gaps = 2/57 (3%)
Frame = +3
Query: 783 PXPGV--RXXPPPXXGXXXPXXPPXXXPXPXXPXXPGKXXXXXXPPPG*XXXXFXPP 947
P PG+ R PPP G P PP P P PG PPP F PP
Sbjct: 279 PTPGMTPRPPPPPSSGMWPPPPPP---PPGRTPGPPGMPGMPPPPPPS----RFGPP 328
Score = 29.1 bits (62), Expect = 5.0
Identities = 22/93 (23%), Positives = 22/93 (23%), Gaps = 5/93 (5%)
Frame = +3
Query: 654 PPRCAPPXXXPXPXXXXXXXXXXXXXXXXGGXXPXXXXXXXXSPXPGVRXXPPPXXGXXX 833
PP P P P G P P P PP G
Sbjct: 275 PPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMP 334
Query: 834 PXXP-----PXXXPXPXXPXXPGKXXXXXXPPP 917
P P P P P P P PPP
Sbjct: 335 PPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPP 367
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 32.7 bits (71), Expect = 0.40
Identities = 21/57 (36%), Positives = 22/57 (38%), Gaps = 2/57 (3%)
Frame = +3
Query: 783 PXPGV--RXXPPPXXGXXXPXXPPXXXPXPXXPXXPGKXXXXXXPPPG*XXXXFXPP 947
P PG+ R PPP G P PP P P PG PPP F PP
Sbjct: 289 PTPGMTPRPPPPPSSGMWPPPPPP---PPGRTPGPPGMPGMPPPPPPS----RFGPP 338
Score = 29.1 bits (62), Expect = 5.0
Identities = 22/93 (23%), Positives = 22/93 (23%), Gaps = 5/93 (5%)
Frame = +3
Query: 654 PPRCAPPXXXPXPXXXXXXXXXXXXXXXXGGXXPXXXXXXXXSPXPGVRXXPPPXXGXXX 833
PP P P P G P P P PP G
Sbjct: 285 PPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMP 344
Query: 834 PXXP-----PXXXPXPXXPXXPGKXXXXXXPPP 917
P P P P P P P PPP
Sbjct: 345 PPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPP 377
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 29.9 bits (64), Expect = 2.8
Identities = 22/90 (24%), Positives = 25/90 (27%)
Frame = +3
Query: 648 ESPPRCAPPXXXPXPXXXXXXXXXXXXXXXXGGXXPXXXXXXXXSPXPGVRXXPPPXXGX 827
++PP +PP P G P SP P PPP
Sbjct: 230 QAPPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTG---SPPPPPTGSPPPPPAG 286
Query: 828 XXPXXPPXXXPXPXXPXXPGKXXXXXXPPP 917
P PP P P G PPP
Sbjct: 287 GSP-PPPRAGSPPPPPPPRGSPPTGSLPPP 315
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 29.9 bits (64), Expect = 2.8
Identities = 22/90 (24%), Positives = 25/90 (27%)
Frame = +3
Query: 648 ESPPRCAPPXXXPXPXXXXXXXXXXXXXXXXGGXXPXXXXXXXXSPXPGVRXXPPPXXGX 827
++PP +PP P G P SP P PPP
Sbjct: 251 QAPPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTG---SPPPPPTGSPPPPPAG 307
Query: 828 XXPXXPPXXXPXPXXPXXPGKXXXXXXPPP 917
P PP P P G PPP
Sbjct: 308 GSP-PPPRAGSPPPPPPPRGSPPTGSLPPP 336
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 29.9 bits (64), Expect = 2.8
Identities = 22/90 (24%), Positives = 25/90 (27%)
Frame = +3
Query: 648 ESPPRCAPPXXXPXPXXXXXXXXXXXXXXXXGGXXPXXXXXXXXSPXPGVRXXPPPXXGX 827
++PP +PP P G P SP P PPP
Sbjct: 236 QAPPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTG---SPPPPPTGSPPPPPAG 292
Query: 828 XXPXXPPXXXPXPXXPXXPGKXXXXXXPPP 917
P PP P P G PPP
Sbjct: 293 GSP-PPPRAGSPPPPPPPRGSPPTGSLPPP 321
>AF099925-3|AAC69507.1| 394|Caenorhabditis elegans Collagen protein
69 protein.
Length = 394
Score = 29.5 bits (63), Expect = 3.7
Identities = 14/33 (42%), Positives = 14/33 (42%)
Frame = +3
Query: 789 PGVRXXPPPXXGXXXPXXPPXXXPXPXXPXXPG 887
PG R PP G P PP P P P PG
Sbjct: 254 PG-RKGPPGLPGQCGPPGPPGYTPPPGPPGTPG 285
>Z73102-2|CAB63428.1| 341|Caenorhabditis elegans Hypothetical
protein B0035.1b protein.
Length = 341
Score = 28.3 bits (60), Expect = 8.7
Identities = 13/36 (36%), Positives = 14/36 (38%)
Frame = +3
Query: 780 SPXPGVRXXPPPXXGXXXPXXPPXXXPXPXXPXXPG 887
+P PGV PP G P P P P PG
Sbjct: 168 APAPGVYMPPPGMPGAYPPPRMPIGHGPPGGPPMPG 203
>Z73102-1|CAA97419.1| 298|Caenorhabditis elegans Hypothetical
protein B0035.1a protein.
Length = 298
Score = 28.3 bits (60), Expect = 8.7
Identities = 13/36 (36%), Positives = 14/36 (38%)
Frame = +3
Query: 780 SPXPGVRXXPPPXXGXXXPXXPPXXXPXPXXPXXPG 887
+P PGV PP G P P P P PG
Sbjct: 168 APAPGVYMPPPGMPGAYPPPRMPIGHGPPGGPPMPG 203
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 28.3 bits (60), Expect = 8.7
Identities = 16/57 (28%), Positives = 17/57 (29%)
Frame = -2
Query: 961 GXXPXGGXKXXXFXPGGGXXXXXXXPGXXGXXGXGXXXGGXXGXXXPXXGGGXXLTP 791
G GG + GG G G G G GG G GGG P
Sbjct: 242 GGYATGGSSGGGYSSGGSSGGGYSTGGGGGYAGGGGGGGGSSGGYAGSSGGGGYSAP 298
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 28.3 bits (60), Expect = 8.7
Identities = 16/57 (28%), Positives = 17/57 (29%)
Frame = -2
Query: 961 GXXPXGGXKXXXFXPGGGXXXXXXXPGXXGXXGXGXXXGGXXGXXXPXXGGGXXLTP 791
G GG + GG G G G G GG G GGG P
Sbjct: 242 GGYATGGSSGGGYSSGGSSGGGYSTGGGGGYAGGGGGGGGSSGGYAGSSGGGGYSAP 298
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,288,645
Number of Sequences: 27780
Number of extensions: 242207
Number of successful extensions: 915
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 804
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2500474882
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -