Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_J19
         (944 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0962 + 33114226-33114684,33114806-33114853,33115166-331152...    31   1.0  
01_01_0553 - 4067921-4068180,4068437-4068455,4069101-4070225           29   3.7  
07_01_0080 + 587674-588510                                             26   5.1  
12_02_1111 - 26157796-26160330                                         29   7.1  
09_06_0020 - 20267190-20267612,20269086-20269495,20269573-202697...    29   7.1  
12_01_0373 + 2897874-2898911                                           25   8.3  
06_03_0082 + 16363742-16364632                                         28   9.4  
02_05_0686 - 30900748-30902167,30903442-30904742                       24   9.9  

>02_05_0962 +
           33114226-33114684,33114806-33114853,33115166-33115286,
           33115760-33116008,33116149-33116302,33116493-33116985,
           33117524-33117596,33118285-33118343
          Length = 551

 Score = 31.5 bits (68), Expect = 1.0
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +2

Query: 512 GGGGGGXFXXXKKXPPPPXGK 574
           GGGGGG F   +  PPPP  +
Sbjct: 54  GGGGGGGFLRLRSAPPPPPSR 74



 Score = 29.5 bits (63), Expect = 4.1
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -3

Query: 564 GGGGXFFXXKKXPPPPP 514
           GGGG F   +  PPPPP
Sbjct: 56  GGGGGFLRLRSAPPPPP 72


>01_01_0553 - 4067921-4068180,4068437-4068455,4069101-4070225
          Length = 467

 Score = 29.5 bits (63), Expect = 4.1
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = +2

Query: 512 GGGGGGXFXXXKKXPPPP 565
           GGGGGG F      PPPP
Sbjct: 22  GGGGGGGFSPTAAKPPPP 39



 Score = 28.7 bits (61), Expect = 7.1
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = +2

Query: 512 GGGGGGXFXXXKKXPPPP 565
           GGGGGG      K PPPP
Sbjct: 23  GGGGGGFSPTAAKPPPPP 40



 Score = 27.1 bits (57), Expect(2) = 3.7
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -3

Query: 564 GGGGXFFXXKKXPPPPP 514
           GGGG F      PPPPP
Sbjct: 24  GGGGGFSPTAAKPPPPP 40



 Score = 21.0 bits (42), Expect(2) = 3.7
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = -3

Query: 528 PPPPPP 511
           PPPPPP
Sbjct: 57  PPPPPP 62


>07_01_0080 + 587674-588510
          Length = 278

 Score = 26.2 bits (55), Expect(2) = 5.1
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = -3

Query: 570 PXGGGGXFFXXKKXPPPPPP 511
           P  GG   F     PPPPPP
Sbjct: 80  PRLGGDGMFRRPPPPPPPPP 99



 Score = 21.4 bits (43), Expect(2) = 5.1
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -3

Query: 528 PPPPPPXXXKK 496
           PPPPPP   ++
Sbjct: 116 PPPPPPLFTRR 126


>12_02_1111 - 26157796-26160330
          Length = 844

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 549 FFXXKKXPPPPPPXXXKKKK 490
           FF  +  PPPPPP   KK++
Sbjct: 235 FFTKENLPPPPPPAPAKKEQ 254


>09_06_0020 -
           20267190-20267612,20269086-20269495,20269573-20269747,
           20270833-20271066,20271164-20271265,20271354-20272091,
           20272204-20272321,20272417-20272667,20272768-20272932
          Length = 871

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 13/35 (37%), Positives = 15/35 (42%)
 Frame = +2

Query: 494 FFFXXXGGGGGGXFXXXKKXPPPPXGKXXFXFXXP 598
           F +   GGGGGG     +  P PP  K    F  P
Sbjct: 15  FSYDAGGGGGGGGVHNSRLLPTPPVPKPGGGFAAP 49


>12_01_0373 + 2897874-2898911
          Length = 345

 Score = 24.6 bits (51), Expect(2) = 8.3
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -3

Query: 528 PPPPPPXXXKKKK 490
           PPPPPP   +K+K
Sbjct: 159 PPPPPPAEEEKEK 171



 Score = 22.2 bits (45), Expect(2) = 8.3
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -3

Query: 537 KKXPPPPPP 511
           ++ PPPPPP
Sbjct: 153 RRPPPPPPP 161


>06_03_0082 + 16363742-16364632
          Length = 296

 Score = 28.3 bits (60), Expect = 9.4
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 564 GGGGXFFXXKKXPPPPPP 511
           GGG  F   ++ PPPPPP
Sbjct: 157 GGGDQFGGGEERPPPPPP 174


>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 23.8 bits (49), Expect(2) = 9.9
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -3

Query: 528 PPPPPPXXXKK 496
           PPPPPP   KK
Sbjct: 364 PPPPPPPGGKK 374



 Score = 22.6 bits (46), Expect(2) = 9.9
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -3

Query: 534 KXPPPPPP 511
           K PPPPPP
Sbjct: 342 KGPPPPPP 349


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,442,051
Number of Sequences: 37544
Number of extensions: 239185
Number of successful extensions: 3253
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1292
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2869
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2717819680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)