Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_J18
         (915 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC806.07 |ndk1||nucleoside diphosphate kinase|Schizosaccharomy...    81   2e-16

>SPAC806.07 |ndk1||nucleoside diphosphate kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 151

 Score = 81.4 bits (192), Expect = 2e-16
 Identities = 43/109 (39%), Positives = 61/109 (55%)
 Frame = +1

Query: 232 VKPDGVQXWSCGHNY*TXKKEXLQTTSVMKFVWPS*ELXQXXXSDXXSRPXFPGLVXYMN 411
           VKPD VQ    G+     + +  +  + +KF+ PS +L +   ++   +P +  LV +M 
Sbjct: 10  VKPDAVQRGLIGYIISKFELKGYKLRA-LKFLVPSRDLVEEHYAEHKGKPFYEKLVGFMA 68

Query: 412 XGPVVPMVWEGLXVVNTGRXLLGATXPTDSXXGTIRXXLCIXLGRNIIH 558
            GPV  M+WEG   V TGR +LGA+ P DS  GTIR    I LGRN+ H
Sbjct: 69  SGPVCAMIWEGKQAVKTGRLMLGASNPLDSAPGTIRGDYGIDLGRNVCH 117


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,577,874
Number of Sequences: 5004
Number of extensions: 16526
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)