Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_J18
         (915 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79754-13|CAB02101.1|  153|Caenorhabditis elegans Hypothetical p...    85   9e-17
AC006644-2|AAF39837.1|  118|Caenorhabditis elegans Hypothetical ...    46   4e-05

>Z79754-13|CAB02101.1|  153|Caenorhabditis elegans Hypothetical
           protein F25H2.5 protein.
          Length = 153

 Score = 84.6 bits (200), Expect = 9e-17
 Identities = 44/109 (40%), Positives = 57/109 (52%)
 Frame = +1

Query: 232 VKPDGVQXWSCGHNY*TXKKEXLQTTSVMKFVWPS*ELXQXXXSDXXSRPXFPGLVXYMN 411
           +KPDGV     G      ++   +  ++ +       L +    D   +P FP L+ YM+
Sbjct: 11  IKPDGVHRGLVGKIIARFEERGYKLVALKQMTASKAHL-EVHYQDLKDKPFFPSLIEYMS 69

Query: 412 XGPVVPMVWEGLXVVNTGRXLLGATXPTDSXXGTIRXXLCIXLGRNIIH 558
            GPVV MVW+GL VV  GR +LGAT P  S  GTIR   CI  GRNI H
Sbjct: 70  SGPVVAMVWQGLDVVKQGRSMLGATNPLASAPGTIRGDFCIQTGRNICH 118


>AC006644-2|AAF39837.1|  118|Caenorhabditis elegans Hypothetical
           protein F55A3.6 protein.
          Length = 118

 Score = 46.0 bits (104), Expect = 4e-05
 Identities = 19/35 (54%), Positives = 24/35 (68%)
 Frame = +1

Query: 376 RPXFPGLVXYMNXGPVVPMVWEGLXVVNTGRXLLG 480
           +P FP L+ YM+ GPVV M+WEG  VV   R +LG
Sbjct: 33  KPFFPLLIDYMSSGPVVAMLWEGCDVVKRARVILG 67


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,107,046
Number of Sequences: 27780
Number of extensions: 103824
Number of successful extensions: 81
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2339274014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)