Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_J17
         (938 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    34   0.17 
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    34   0.17 
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    34   0.17 

>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform b protein.
          Length = 518

 Score = 33.9 bits (74), Expect = 0.17
 Identities = 23/86 (26%), Positives = 27/86 (31%), Gaps = 2/86 (2%)
 Frame = +2

Query: 482 PPXXXLAPXXRVGXXVXPPPKGGXRFSPKXGXXPXKXXLXKGPQKAXNPKKAXLVGFFPK 661
           PP    +P         PPP  G    P+ G  P        P  A         G  P 
Sbjct: 240 PPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPP 299

Query: 662 XPXPRXNXK--KIPPPXXXGGXXPXG 733
            P PR +     +PPP   G   P G
Sbjct: 300 PPPPRGSPPTGSLPPPQAGGSPPPAG 325


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform c protein.
          Length = 539

 Score = 33.9 bits (74), Expect = 0.17
 Identities = 23/86 (26%), Positives = 27/86 (31%), Gaps = 2/86 (2%)
 Frame = +2

Query: 482 PPXXXLAPXXRVGXXVXPPPKGGXRFSPKXGXXPXKXXLXKGPQKAXNPKKAXLVGFFPK 661
           PP    +P         PPP  G    P+ G  P        P  A         G  P 
Sbjct: 261 PPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPP 320

Query: 662 XPXPRXNXK--KIPPPXXXGGXXPXG 733
            P PR +     +PPP   G   P G
Sbjct: 321 PPPPRGSPPTGSLPPPQAGGSPPPAG 346


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform a protein.
          Length = 524

 Score = 33.9 bits (74), Expect = 0.17
 Identities = 23/86 (26%), Positives = 27/86 (31%), Gaps = 2/86 (2%)
 Frame = +2

Query: 482 PPXXXLAPXXRVGXXVXPPPKGGXRFSPKXGXXPXKXXLXKGPQKAXNPKKAXLVGFFPK 661
           PP    +P         PPP  G    P+ G  P        P  A         G  P 
Sbjct: 246 PPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPP 305

Query: 662 XPXPRXNXK--KIPPPXXXGGXXPXG 733
            P PR +     +PPP   G   P G
Sbjct: 306 PPPPRGSPPTGSLPPPQAGGSPPPAG 331


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.317    0.148    0.493 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,367,538
Number of Sequences: 27780
Number of extensions: 159920
Number of successful extensions: 233
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2423194158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)