Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_J16
         (887 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|...   348   5e-97
SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein ...   348   5e-97
SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein L...   348   5e-97
SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit L2|Sc...    54   4e-08
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces...    30   0.38 
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom...    26   8.2  

>SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|60S
           ribosomal protein L8|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 253

 Score =  348 bits (856), Expect = 5e-97
 Identities = 160/236 (67%), Positives = 192/236 (81%)
 Frame = +3

Query: 111 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLXYAERHGYIKGVVKDIIHDPGRGAPLAV 290
           MGRVIRAQRK +G +F +HT+ RKGA +LR+L +AERHGYI+GVV+ IIHDPGRGAPLA 
Sbjct: 1   MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAK 59

Query: 291 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKM 470
           V FR+PY ++T  E F+A EG+YTGQFVYCGK A L VGNV+PVG MPEGTI+ N+EEK 
Sbjct: 60  VAFRNPYHYRTDVETFVATEGMYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKA 119

Query: 471 GDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDXPIL 650
           GDRG L R+SGN+  ++GH+ D  +TRVKLPSGAKKV+PSS RG+VGIVAGGGRID P+L
Sbjct: 120 GDRGALGRSSGNYVIIVGHDVDTGKTRVKLPSGAKKVVPSSARGVVGIVAGGGRIDKPLL 179

Query: 651 KAGRAYHKYKVKRNCXPYVRGVAMNPVXHPPGWWYHQHIGKXSXVXRGTFAGRKVG 818
           KAGRA+HKY+VKRNC P  RGVAMNPV HP G   HQH+G  + V R +  G+KVG
Sbjct: 180 KAGRAFHKYRVKRNCWPRTRGVAMNPVDHPHGGGNHQHVGHSTTVPRQSAPGQKVG 235


>SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein
           L8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 253

 Score =  348 bits (856), Expect = 5e-97
 Identities = 160/236 (67%), Positives = 192/236 (81%)
 Frame = +3

Query: 111 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLXYAERHGYIKGVVKDIIHDPGRGAPLAV 290
           MGRVIRAQRK +G +F +HT+ RKGA +LR+L +AERHGYI+GVV+ IIHDPGRGAPLA 
Sbjct: 1   MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAK 59

Query: 291 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKM 470
           V FR+PY ++T  E F+A EG+YTGQFVYCGK A L VGNV+PVG MPEGTI+ N+EEK 
Sbjct: 60  VAFRNPYHYRTDVETFVATEGMYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKA 119

Query: 471 GDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDXPIL 650
           GDRG L R+SGN+  ++GH+ D  +TRVKLPSGAKKV+PSS RG+VGIVAGGGRID P+L
Sbjct: 120 GDRGALGRSSGNYVIIVGHDVDTGKTRVKLPSGAKKVVPSSARGVVGIVAGGGRIDKPLL 179

Query: 651 KAGRAYHKYKVKRNCXPYVRGVAMNPVXHPPGWWYHQHIGKXSXVXRGTFAGRKVG 818
           KAGRA+HKY+VKRNC P  RGVAMNPV HP G   HQH+G  + V R +  G+KVG
Sbjct: 180 KAGRAFHKYRVKRNCWPRTRGVAMNPVDHPHGGGNHQHVGHSTTVPRQSAPGQKVG 235


>SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein
           L8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 253

 Score =  348 bits (856), Expect = 5e-97
 Identities = 160/236 (67%), Positives = 192/236 (81%)
 Frame = +3

Query: 111 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLXYAERHGYIKGVVKDIIHDPGRGAPLAV 290
           MGRVIRAQRK +G +F +HT+ RKGA +LR+L +AERHGYI+GVV+ IIHDPGRGAPLA 
Sbjct: 1   MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAK 59

Query: 291 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKM 470
           V FR+PY ++T  E F+A EG+YTGQFVYCGK A L VGNV+PVG MPEGTI+ N+EEK 
Sbjct: 60  VAFRNPYHYRTDVETFVATEGMYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKA 119

Query: 471 GDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDXPIL 650
           GDRG L R+SGN+  ++GH+ D  +TRVKLPSGAKKV+PSS RG+VGIVAGGGRID P+L
Sbjct: 120 GDRGALGRSSGNYVIIVGHDVDTGKTRVKLPSGAKKVVPSSARGVVGIVAGGGRIDKPLL 179

Query: 651 KAGRAYHKYKVKRNCXPYVRGVAMNPVXHPPGWWYHQHIGKXSXVXRGTFAGRKVG 818
           KAGRA+HKY+VKRNC P  RGVAMNPV HP G   HQH+G  + V R +  G+KVG
Sbjct: 180 KAGRAFHKYRVKRNCWPRTRGVAMNPVDHPHGGGNHQHVGHSTTVPRQSAPGQKVG 235


>SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit
           L2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 318

 Score = 53.6 bits (123), Expect = 4e-08
 Identities = 37/125 (29%), Positives = 61/125 (48%)
 Frame = +3

Query: 396 LEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAK 575
           L+ GN  P+  +P GT++  +      + +L R++G+ A +I    D K   V+L SG +
Sbjct: 162 LKPGNCFPLRLIPIGTVIHAIGVNPNQKAKLCRSAGSSARIIAF--DGKYAIVRLQSGEE 219

Query: 576 KVLPSSNRGMVGIVAGGGRIDXPILKAGRAYHKYKVKRNCXPYVRGVAMNPVXHPPGWWY 755
           + +  ++   +G+V+        + KAGR+           P VRG AMNP  HP G   
Sbjct: 220 RKILDTSFATIGVVSNIYWQHRQLGKAGRSRWL-----GIRPTVRGTAMNPCDHPHGGGG 274

Query: 756 HQHIG 770
            + IG
Sbjct: 275 GKSIG 279


>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 897

 Score = 30.3 bits (65), Expect = 0.38
 Identities = 17/57 (29%), Positives = 24/57 (42%)
 Frame = -2

Query: 622 PATIPTMPLLLDGRTFLAPDGSFTLVRLASGLCPITVAKFPEARARRPLSPIFSSRL 452
           PAT+P          F  P   F   +L SGL    V+ +P+   +   +P   SRL
Sbjct: 246 PATVPITQAASTANAFQQPSNQFQTQKLPSGLDTRPVSSYPDELTQLESNPDSFSRL 302


>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
           Eng2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 706

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -2

Query: 481 PLSPIFSSRLHTMVPSGIAPTGITFPTSRVAFF 383
           P++P+F SR H   P G+  T   FP     F+
Sbjct: 11  PINPVFPSRAHPSPPLGL--TSNLFPIQTNKFY 41


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,304,973
Number of Sequences: 5004
Number of extensions: 67838
Number of successful extensions: 191
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)