Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP24_F_J13
(883 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z48615-1|CAA88531.1| 953|Homo sapiens serine/threonine kinase w... 35 0.34
X90846-1|CAA62351.1| 954|Homo sapiens mixed lineage kinase 2 pr... 35 0.34
Z98051-2|CAI42861.1| 878|Homo sapiens PHD finger protein 8 prot... 32 3.2
Z98051-1|CAI42860.1| 1060|Homo sapiens PHD finger protein 8 prot... 32 3.2
BC064495-1|AAH64495.1| 299|Homo sapiens RCOR1 protein protein. 32 3.2
BC053861-1|AAH53861.1| 1024|Homo sapiens PHD finger protein 8 pr... 32 3.2
BC051003-1|AAH51003.1| 293|Homo sapiens RCOR1 protein protein. 32 3.2
AL732374-7|CAI41582.1| 952|Homo sapiens PHD finger protein 8 pr... 32 3.2
AL732374-6|CAI41581.1| 658|Homo sapiens PHD finger protein 8 pr... 32 3.2
AL732374-2|CAI41577.1| 878|Homo sapiens PHD finger protein 8 pr... 32 3.2
AL732374-1|CAI41576.1| 1060|Homo sapiens PHD finger protein 8 pr... 32 3.2
AL589872-1|CAH70724.1| 1060|Homo sapiens PHD finger protein 8 pr... 32 3.2
AK021696-1|BAB13877.1| 790|Homo sapiens protein ( Homo sapiens ... 32 3.2
AF155595-1|AAF01498.1| 482|Homo sapiens CoREST protein protein. 32 3.2
AB029034-1|BAA83063.1| 1084|Homo sapiens KIAA1111 protein protein. 32 3.2
AK092711-1|BAC03955.1| 149|Homo sapiens protein ( Homo sapiens ... 31 5.5
>Z48615-1|CAA88531.1| 953|Homo sapiens serine/threonine kinase with
SH3 domain, leucine zipper domain and proline rich
protein.
Length = 953
Score = 35.1 bits (77), Expect = 0.34
Identities = 22/68 (32%), Positives = 34/68 (50%)
Frame = -2
Query: 708 ERRTGIR*AAGSEQESARGSFQGKTPGIFIVLSGFATSDLSVDFCDARQGGGAYGKTPAT 529
ER G+ GS+Q S+ GK+P + GFA+ + +F +A GG + +P +
Sbjct: 573 ERLKGL--GEGSKQWSSSAPNLGKSPKHTPIAPGFASLNEMEEFAEAEDGGSSVPPSPYS 630
Query: 528 RPFYGSWP 505
P Y S P
Sbjct: 631 TPSYLSVP 638
>X90846-1|CAA62351.1| 954|Homo sapiens mixed lineage kinase 2
protein.
Length = 954
Score = 35.1 bits (77), Expect = 0.34
Identities = 22/68 (32%), Positives = 34/68 (50%)
Frame = -2
Query: 708 ERRTGIR*AAGSEQESARGSFQGKTPGIFIVLSGFATSDLSVDFCDARQGGGAYGKTPAT 529
ER G+ GS+Q S+ GK+P + GFA+ + +F +A GG + +P +
Sbjct: 574 ERLKGL--GEGSKQWSSSAPNLGKSPKHTPIAPGFASLNEMEEFAEAEDGGSSVPPSPYS 631
Query: 528 RPFYGSWP 505
P Y S P
Sbjct: 632 TPSYLSVP 639
>Z98051-2|CAI42861.1| 878|Homo sapiens PHD finger protein 8
protein.
Length = 878
Score = 31.9 bits (69), Expect = 3.2
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = +2
Query: 587 LKSEVAKPDRTIKIPGVFPWKLPRALSCSDPAAYRIP 697
+ + K T+ I FP KLPRA CSDP R P
Sbjct: 621 IDERLGKEKATLIIRPKFPRKLPRAKPCSDPNRVREP 657
>Z98051-1|CAI42860.1| 1060|Homo sapiens PHD finger protein 8
protein.
Length = 1060
Score = 31.9 bits (69), Expect = 3.2
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = +2
Query: 587 LKSEVAKPDRTIKIPGVFPWKLPRALSCSDPAAYRIP 697
+ + K T+ I FP KLPRA CSDP R P
Sbjct: 657 IDERLGKEKATLIIRPKFPRKLPRAKPCSDPNRVREP 693
>BC064495-1|AAH64495.1| 299|Homo sapiens RCOR1 protein protein.
Length = 299
Score = 31.9 bits (69), Expect = 3.2
Identities = 18/43 (41%), Positives = 24/43 (55%)
Frame = -3
Query: 710 EKGGQVSGKRQGRNRRAHEGASRGKRLVSL*SCRVSPPLT*AS 582
EKG +VSGKR+GRN A ++ + +C SP T AS
Sbjct: 3 EKGPEVSGKRRGRNNAAASASAAAASAAASAAC-ASPAATAAS 44
>BC053861-1|AAH53861.1| 1024|Homo sapiens PHD finger protein 8
protein.
Length = 1024
Score = 31.9 bits (69), Expect = 3.2
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = +2
Query: 587 LKSEVAKPDRTIKIPGVFPWKLPRALSCSDPAAYRIP 697
+ + K T+ I FP KLPRA CSDP R P
Sbjct: 621 IDERLGKEKATLIIRPKFPRKLPRAKPCSDPNRVREP 657
>BC051003-1|AAH51003.1| 293|Homo sapiens RCOR1 protein protein.
Length = 293
Score = 31.9 bits (69), Expect = 3.2
Identities = 18/43 (41%), Positives = 24/43 (55%)
Frame = -3
Query: 710 EKGGQVSGKRQGRNRRAHEGASRGKRLVSL*SCRVSPPLT*AS 582
EKG +VSGKR+GRN A ++ + +C SP T AS
Sbjct: 3 EKGPEVSGKRRGRNNAAASASAAAASAAASAAC-ASPAATAAS 44
>AL732374-7|CAI41582.1| 952|Homo sapiens PHD finger protein 8
protein.
Length = 952
Score = 31.9 bits (69), Expect = 3.2
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = +2
Query: 587 LKSEVAKPDRTIKIPGVFPWKLPRALSCSDPAAYRIP 697
+ + K T+ I FP KLPRA CSDP R P
Sbjct: 524 IDERLGKEKATLIIRPKFPRKLPRAKPCSDPNRVREP 560
>AL732374-6|CAI41581.1| 658|Homo sapiens PHD finger protein 8
protein.
Length = 658
Score = 31.9 bits (69), Expect = 3.2
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = +2
Query: 587 LKSEVAKPDRTIKIPGVFPWKLPRALSCSDPAAYRIP 697
+ + K T+ I FP KLPRA CSDP R P
Sbjct: 384 IDERLGKEKATLIIRPKFPRKLPRAKPCSDPNRVREP 420
>AL732374-2|CAI41577.1| 878|Homo sapiens PHD finger protein 8
protein.
Length = 878
Score = 31.9 bits (69), Expect = 3.2
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = +2
Query: 587 LKSEVAKPDRTIKIPGVFPWKLPRALSCSDPAAYRIP 697
+ + K T+ I FP KLPRA CSDP R P
Sbjct: 621 IDERLGKEKATLIIRPKFPRKLPRAKPCSDPNRVREP 657
>AL732374-1|CAI41576.1| 1060|Homo sapiens PHD finger protein 8
protein.
Length = 1060
Score = 31.9 bits (69), Expect = 3.2
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = +2
Query: 587 LKSEVAKPDRTIKIPGVFPWKLPRALSCSDPAAYRIP 697
+ + K T+ I FP KLPRA CSDP R P
Sbjct: 657 IDERLGKEKATLIIRPKFPRKLPRAKPCSDPNRVREP 693
>AL589872-1|CAH70724.1| 1060|Homo sapiens PHD finger protein 8
protein.
Length = 1060
Score = 31.9 bits (69), Expect = 3.2
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = +2
Query: 587 LKSEVAKPDRTIKIPGVFPWKLPRALSCSDPAAYRIP 697
+ + K T+ I FP KLPRA CSDP R P
Sbjct: 657 IDERLGKEKATLIIRPKFPRKLPRAKPCSDPNRVREP 693
>AK021696-1|BAB13877.1| 790|Homo sapiens protein ( Homo sapiens
cDNA FLJ11634 fis, clone HEMBA1004275, moderately
similar to Homo sapiens PHD-finger protein (GRC5) mRNA.
).
Length = 790
Score = 31.9 bits (69), Expect = 3.2
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = +2
Query: 587 LKSEVAKPDRTIKIPGVFPWKLPRALSCSDPAAYRIP 697
+ + K T+ I FP KLPRA CSDP R P
Sbjct: 520 IDERLGKEKATLIIRPKFPRKLPRAKPCSDPNRVREP 556
>AF155595-1|AAF01498.1| 482|Homo sapiens CoREST protein protein.
Length = 482
Score = 31.9 bits (69), Expect = 3.2
Identities = 18/43 (41%), Positives = 24/43 (55%)
Frame = -3
Query: 710 EKGGQVSGKRQGRNRRAHEGASRGKRLVSL*SCRVSPPLT*AS 582
EKG +VSGKR+GRN A ++ + +C SP T AS
Sbjct: 3 EKGPEVSGKRRGRNNAAASASAAAASAAASAAC-ASPAATAAS 44
>AB029034-1|BAA83063.1| 1084|Homo sapiens KIAA1111 protein protein.
Length = 1084
Score = 31.9 bits (69), Expect = 3.2
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = +2
Query: 587 LKSEVAKPDRTIKIPGVFPWKLPRALSCSDPAAYRIP 697
+ + K T+ I FP KLPRA CSDP R P
Sbjct: 681 IDERLGKEKATLIIRPKFPRKLPRAKPCSDPNRVREP 717
>AK092711-1|BAC03955.1| 149|Homo sapiens protein ( Homo sapiens
cDNA FLJ35392 fis, clone SKNSH2000716. ).
Length = 149
Score = 31.1 bits (67), Expect = 5.5
Identities = 20/39 (51%), Positives = 20/39 (51%)
Frame = -2
Query: 567 RQGGGAYGKTPATRPFYGSWPFAGLLLTCSFLRYPPDSV 451
RQ G G A R F S P GLL CS LR PDSV
Sbjct: 69 RQHFGIPGYPEAARDFSSS-PAPGLLTLCSRLRAKPDSV 106
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,067,552
Number of Sequences: 237096
Number of extensions: 2370716
Number of successful extensions: 7232
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 6904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7230
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11270645666
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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