Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_J11
         (875 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomy...    42   1e-04
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    38   0.002
SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase |Schizos...    26   6.1  

>SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 589

 Score = 41.9 bits (94), Expect = 1e-04
 Identities = 18/40 (45%), Positives = 27/40 (67%)
 Frame = +3

Query: 414 ISPPSNFEHRVHTGFDKHEGKFVGLPLQWASLVGNNQILK 533
           +S P N +H+VH G D +EG +VGLP +W  L+ ++ I K
Sbjct: 129 VSSPMNPKHQVHVGID-NEGNYVGLPKEWILLLQSSSITK 167


>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 37.9 bits (84), Expect = 0.002
 Identities = 16/42 (38%), Positives = 26/42 (61%)
 Frame = +3

Query: 411 LISPPSNFEHRVHTGFDKHEGKFVGLPLQWASLVGNNQILKS 536
           +IS P + +H  H GF+   G+F G+P +W +L+  + I KS
Sbjct: 146 VISSPFDPKHVTHVGFNYDTGEFTGMPTEWQALLKVSGITKS 187


>SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 891

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +1

Query: 388 FLRRRKSHLFRRLVILNTEYTLVSISTRESLLDFLFSGLHSL 513
           F+  R  H  +RL+ILN +   V+   R   +DF +  + S+
Sbjct: 633 FIGNRYDHAKKRLLILNFDGNAVTWEGRHEFVDFHYGYMVSI 674


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,555,704
Number of Sequences: 5004
Number of extensions: 74210
Number of successful extensions: 178
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)