Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_J11
         (875 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0980 + 26520832-26520922,26521021-26521409,26521612-265219...    29   4.9  
03_04_0047 + 16800213-16800280,16800401-16800435,16800652-168007...    29   4.9  
03_01_0325 + 2529875-2529922,2530181-2530279,2530958-2531055,253...    29   6.5  

>06_03_0980 +
           26520832-26520922,26521021-26521409,26521612-26521927,
           26522869-26523769,26524103-26524184
          Length = 592

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 24/111 (21%), Positives = 48/111 (43%), Gaps = 2/111 (1%)
 Frame = -2

Query: 583 VGVISEGSTNGKGRFVDFNI*LFPTSEAH*RGSPTNFPSCLSKPVCTLCSKLLGGEISGF 404
           + V+   S NG   +++    + P +    RG P +  S L   V T+  K+ G    G 
Sbjct: 365 IQVVGIPSANGNESYLEAASYIVPLAPILRRGGPFSPSSPLYVTVVTIMEKVPGPLSEGS 424

Query: 403 FFFLEN--IV*PNYQFNILKLNQASKKCIHITSSTPRLLASVTINGKESSL 257
            +   +  +  P+ +FN L   +   +C+       ++L S T++   S++
Sbjct: 425 LWLTSSNPLESPSVRFNYLSRREDLARCVTGMRRVAKVLESTTMDVFRSAM 475


>03_04_0047 +
           16800213-16800280,16800401-16800435,16800652-16800754,
           16801333-16801537,16801565-16801647,16801986-16802016,
           16802092-16802148,16802374-16802514,16802726-16802779,
           16802915-16802962,16803106-16803153
          Length = 290

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 18/44 (40%), Positives = 26/44 (59%)
 Frame = +3

Query: 498 WASLVGNNQILKSTNRPLPLVDPSEITPTEILDLKTIVGGDHRI 629
           WA+ V  N I+ S N   PL+ P+ +TP   LDL T++ G+  I
Sbjct: 65  WAN-VWKNTIVASENENPPLM-PAIMTPAGALDLATVLLGNRII 106


>03_01_0325 +
           2529875-2529922,2530181-2530279,2530958-2531055,
           2531945-2532031,2532652-2532684,2532813-2532890,
           2533059-2533183,2533267-2533349,2533436-2533527,
           2533611-2533680,2533760-2533829,2533919-2534073
          Length = 345

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -3

Query: 867 LKLDTAVEQEATGGDSSVLMVVH*PDYVNL 778
           +++D AVEQ  + G SS+L  +  P+Y NL
Sbjct: 72  MEMDLAVEQYGSIGASSILSTLSVPEYSNL 101


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,133,619
Number of Sequences: 37544
Number of extensions: 445177
Number of successful extensions: 1040
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1009
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1040
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)