Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_J11
         (875 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    23   4.9  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   4.9  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    23   4.9  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    23   4.9  

>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -2

Query: 484 PTNFPSCLSKPVCTLCSKLLGGEISGFF 401
           P N P   SK +C++C     G+  G +
Sbjct: 98  PPNHPLSGSKHLCSICGDRASGKHYGVY 125


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +3

Query: 528 LKSTNRPLPLVDPSEIT 578
           ++ T++PLP+VD  E T
Sbjct: 302 MEKTSKPLPMVDNPEST 318


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 14/59 (23%), Positives = 27/59 (45%)
 Frame = +1

Query: 622 TG*HQCQL*QDSCLQTFHSNNQPTNKMVLYCQRHQMLLDLVLLEAQXHQKFDEIYVIRL 798
           TG   C L Q    + F   N   NK+ +  ++ Q   + ++   + ++ +DE   IR+
Sbjct: 128 TGSSLCDLVQ-GLERLFDEKNAGNNKITMKSKKEQNAEEDIVDPVEENETYDEFDTIRI 185


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -2

Query: 484 PTNFPSCLSKPVCTLCSKLLGGEISGFF 401
           P N P   SK +C++C     G+  G +
Sbjct: 98  PPNHPLSGSKHLCSICGDRASGKHYGVY 125


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 238,608
Number of Sequences: 438
Number of extensions: 4879
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28402218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)