Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP24_F_J10
(874 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch... 41 2e-04
SPBC19G7.16 |iws1||transcription elongation factor complex subun... 30 0.49
SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|... 29 0.86
SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit Prp1|... 28 1.5
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 28 2.0
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy... 28 2.0
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 27 2.6
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 27 2.6
SPAC4H3.01 |||DNAJ domain protein Caj1/Djp1 type|Schizosaccharom... 27 3.5
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar... 27 3.5
SPAC31G5.21 |||human family 32A homolog|Schizosaccharomyces pomb... 27 3.5
SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificit... 27 4.6
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom... 27 4.6
SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr 2|... 26 6.1
SPBC1685.08 |||histone deacetylase complex subunit Cti6|Schizosa... 26 8.1
>SPBC13E7.02 |cwf24||GCN5-related N
acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 41.1 bits (92), Expect = 2e-04
Identities = 20/70 (28%), Positives = 35/70 (50%)
Frame = +3
Query: 642 KIYRGINNYAQYYKKKDTAAGNASSGLVRKGXIRAPANLRATVRWDYQPDICKDXXETGF 821
++++ N+Y+++ K+ + G V + +R DYQPD+CKD TG+
Sbjct: 142 ELFQSQNDYSRFLPKRKDFEKKSQVGPVLSSNA---STVRMNTIIDYQPDVCKDYKLTGY 198
Query: 822 XGFGDXVNXL 851
G+GD L
Sbjct: 199 CGYGDTCKFL 208
>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 428
Score = 29.9 bits (64), Expect = 0.49
Identities = 18/75 (24%), Positives = 32/75 (42%)
Frame = +3
Query: 429 GPKKSKIDVIEDNDDSNDEEKTSQRTTLSVQQQRENATATYELDTERDRDAQAIFEKAQK 608
G + S +D + ND+ N+ + + +Q A ELD + D + K +
Sbjct: 119 GKRSSTVDAL--NDELNELGENEEEVLTEQKQLDPTLAAKKELDLQMDAVLKPTRTKKRS 176
Query: 609 INEELHGQADDKIYR 653
+ L ADD++ R
Sbjct: 177 NEDNLEQMADDEVLR 191
>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 29.1 bits (62), Expect = 0.86
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Frame = +3
Query: 471 DSNDEEKTSQRT--TLSVQQQRENATATYELDTERDRDAQAIFEKAQKINEELHGQA 635
DS DEE + T T V Q ++ A E ++DR KAQK E G+A
Sbjct: 388 DSEDEEYNNPSTQKTEKVSQSKKGAKVKEEKGLKKDRKLPKKMRKAQKKLERKAGKA 444
>SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit
Prp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 906
Score = 28.3 bits (60), Expect = 1.5
Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Frame = +3
Query: 366 QQVVLPTKRVNKPNPNIQSTGGPKKSKIDVIEDNDDSNDEEK---TSQRTTLSVQQQREN 536
+Q L ++ K NP + S K + + D D +N E T ++ T +++R
Sbjct: 110 KQEQLQKEKYEKENPKVSSQFADLKRGLSTLTDEDWNNIPEPGDLTRKKRTKQPRRERFY 169
Query: 537 ATATYELDTERDRDAQAI 590
AT+ + L + R+ + QAI
Sbjct: 170 ATSDFVLASARNEN-QAI 186
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 27.9 bits (59), Expect = 2.0
Identities = 18/84 (21%), Positives = 38/84 (45%)
Frame = +3
Query: 387 KRVNKPNPNIQSTGGPKKSKIDVIEDNDDSNDEEKTSQRTTLSVQQQRENATATYELDTE 566
KR + P P+ +S KKSK ++ S E ++S + S + E++++ E +
Sbjct: 59 KRASSPEPSKKSVKKQKKSK---KKEESSSESESESSSSESESSSSESESSSSESESSSS 115
Query: 567 RDRDAQAIFEKAQKINEELHGQAD 638
+++ E K E+ ++
Sbjct: 116 ESSSSESEEEVIVKTEEKKESSSE 139
>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1583
Score = 27.9 bits (59), Expect = 2.0
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = +3
Query: 474 SNDEEKTSQRTTLSVQQQRENATATYELDTERDRDAQAIFEKAQKI 611
SNDEE+T +L V ++ + A+ ELD ++ + EK QK+
Sbjct: 899 SNDEEETISELSLEVLEKLWFSPASNELDCQKGYEQLTFLEK-QKL 943
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 27.5 bits (58), Expect = 2.6
Identities = 16/60 (26%), Positives = 28/60 (46%)
Frame = +3
Query: 441 SKIDVIEDNDDSNDEEKTSQRTTLSVQQQRENATATYELDTERDRDAQAIFEKAQKINEE 620
S D ++D N T+ +S Q N+T++ E + +D D+ I +K+ K E
Sbjct: 306 SDSDSSSSSEDGNSNTDTTTSGEVSAQSST-NSTSSEESTSVKDEDSSKIHDKSLKRKHE 364
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 27.5 bits (58), Expect = 2.6
Identities = 25/99 (25%), Positives = 44/99 (44%), Gaps = 4/99 (4%)
Frame = +3
Query: 369 QVVLPTKRVNKPNPNIQSTGGPKKSKIDVIEDNDDSNDEEKTSQR---TTLSVQQQ-REN 536
+VV+P K + PNP+ S+ + EE+ SQR L++QQ+ +E
Sbjct: 487 EVVVPQKNASSPNPS------ETNSRAETPTAAPPQISEEEASQRKDAIKLAIQQRIQEK 540
Query: 537 ATATYELDTERDRDAQAIFEKAQKINEELHGQADDKIYR 653
A A + E +A ++ E+ +A++K R
Sbjct: 541 AEAEAKRKAEEKARLEAEENAKREAEEQAKREAEEKAKR 579
>SPAC4H3.01 |||DNAJ domain protein Caj1/Djp1
type|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 27.1 bits (57), Expect = 3.5
Identities = 18/66 (27%), Positives = 30/66 (45%)
Frame = +3
Query: 492 TSQRTTLSVQQQRENATATYELDTERDRDAQAIFEKAQKINEELHGQADDKIYRGINNYA 671
++ T + +++ Y D D D Q EK QKI+E D+K+ + Y
Sbjct: 16 STDATAVDIKKAYRKLAVKYHPDKNPD-DPQGASEKFQKISEAYQVLGDEKLR---SQYD 71
Query: 672 QYYKKK 689
Q+ K+K
Sbjct: 72 QFGKEK 77
>SPAC9G1.10c |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1191
Score = 27.1 bits (57), Expect = 3.5
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +3
Query: 393 VNKPNPNIQSTGGPKKSKIDVIEDNDDSNDEEKTSQRTTL 512
VN+ P + + KSK + + D +N +EKT++R T+
Sbjct: 10 VNEDEPELPPSVLSLKSKFESLSTGDLTNLDEKTAKRRTV 49
>SPAC31G5.21 |||human family 32A homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 118
Score = 27.1 bits (57), Expect = 3.5
Identities = 14/55 (25%), Positives = 24/55 (43%)
Frame = +3
Query: 468 DDSNDEEKTSQRTTLSVQQQRENATATYELDTERDRDAQAIFEKAQKINEELHGQ 632
D EK + ++ EN +TY++ +D D+ +AQK E + Q
Sbjct: 24 DSKKLAEKVQEHSSRDKSPLEENGVSTYQMLRSKDTDSAMPMTEAQKHFESVQEQ 78
>SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificity
factor complex subunit Rna14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 733
Score = 26.6 bits (56), Expect = 4.6
Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 2/74 (2%)
Frame = +3
Query: 465 NDDSNDEEKTSQRTTLSVQQ--QRENATATYELDTERDRDAQAIFEKAQKINEELHGQAD 638
N D N E S + ++EN + E D + K +++ +L GQ
Sbjct: 2 NSDDNVEADASSNIIKDSPKIKEQENTSTVNESDVLATSTTASSGVKRKRLPNDLVGQLR 61
Query: 639 DKIYRGINNYAQYY 680
DKI N+ + +Y
Sbjct: 62 DKIQENPNDISSWY 75
>SPBC3F6.05 |rga1||GTPase activating protein
Rga1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1150
Score = 26.6 bits (56), Expect = 4.6
Identities = 20/91 (21%), Positives = 36/91 (39%), Gaps = 1/91 (1%)
Frame = +3
Query: 480 DEEKTSQRTTLSVQQQRENATATYELDTERDRDAQA-IFEKAQKINEELHGQADDKIYRG 656
+ +SQR LSV ++EN ++T E + + A + F K +L + +
Sbjct: 581 ENNDSSQRKPLSVDPKQENVSSTVETAKQAETTASSDSFRKYANTLNDLRHLKSSRNRKA 640
Query: 657 INNYAQYYKKKDTAAGNASSGLVRKGXIRAP 749
+N Q T S + G ++P
Sbjct: 641 TSNETQ-SSSNSTETSKLSKNVSESGKDKSP 670
>SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr
2|||Manual
Length = 207
Score = 26.2 bits (55), Expect = 6.1
Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Frame = +3
Query: 393 VNKPNPNIQSTGGPKKSKIDVIEDNDDSNDEEKTSQRT-TLSVQQQRENATATYELDTER 569
+ P + K K D + D+ ++EK S+ T +Q+ E A E ER
Sbjct: 1 MGNPKKRAEKAEAAKSRKQDEEKKKKDAEEDEKWSKGVKTNKKEQEAEKRKAALERKAER 60
Query: 570 DR 575
+R
Sbjct: 61 ER 62
>SPBC1685.08 |||histone deacetylase complex subunit
Cti6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 424
Score = 25.8 bits (54), Expect = 8.1
Identities = 19/86 (22%), Positives = 38/86 (44%)
Frame = +3
Query: 384 TKRVNKPNPNIQSTGGPKKSKIDVIEDNDDSNDEEKTSQRTTLSVQQQRENATATYELDT 563
+K ++ P P +S G K + E+ND+ ++ K S+ + + + + T E D
Sbjct: 185 SKSLSPPAPQDESQGTEINLKQKIEEENDEILEDSKESKDE--NEENKETSTTNVAETDA 242
Query: 564 ERDRDAQAIFEKAQKINEELHGQADD 641
+ + E A +EE H ++
Sbjct: 243 PEEETVDTVEEIA---DEEKHSVKEE 265
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,970,226
Number of Sequences: 5004
Number of extensions: 55948
Number of successful extensions: 234
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 233
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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