Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP24_F_J09
(884 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 114 1e-26
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 95 2e-20
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 91 3e-19
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 85 1e-17
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 83 7e-17
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 79 8e-16
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 77 3e-15
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 75 1e-14
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 74 2e-14
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 71 3e-13
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 67 3e-12
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 65 1e-11
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 63 6e-11
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 63 6e-11
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 62 8e-11
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 62 1e-10
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 57 3e-09
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 57 3e-09
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 54 4e-08
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 53 6e-08
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 51 2e-07
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 50 4e-07
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 38 0.001
SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomy... 29 0.88
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 29 1.2
SPAC15E1.05c |||ethanolamine-phosphate cytidylyltransferase |Sch... 27 2.7
SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces... 27 3.6
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa... 27 3.6
SPCC188.12 |spn6|SPCC584.09|septin Spn6|Schizosaccharomyces pomb... 27 4.7
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 27 4.7
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 26 6.2
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb... 26 6.2
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac... 26 8.2
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 114 bits (275), Expect = 1e-26
Identities = 58/141 (41%), Positives = 81/141 (57%), Gaps = 1/141 (0%)
Frame = +1
Query: 298 RTRDVQIVENVTFTSMLLSEFTLAGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTG 477
+T DV F L L G+ +GF++PSPIQ +P+ G D+L AK+GTG
Sbjct: 34 KTEDVTKTRGTEFEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTG 93
Query: 478 KTVVFSIIALEKLNLNNG-LQVMILTPTREIAAQICDVIKQIGSHHKGLNVEVVMGGLSV 654
KT F I +LEK++ +Q +IL PTRE+A Q V K +G H + V V GG ++
Sbjct: 94 KTAAFVIPSLEKVDTKKSKIQTLILVPTRELALQTSQVCKTLGK-HMNVKVMVTTGGTTL 152
Query: 655 NEDIAKFKKKVHIVVGSPGRL 717
+DI + VHIVVG+PGR+
Sbjct: 153 RDDIIRLNDTVHIVVGTPGRV 173
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 94.7 bits (225), Expect = 2e-20
Identities = 55/150 (36%), Positives = 84/150 (56%), Gaps = 1/150 (0%)
Frame = +1
Query: 295 TRTRDVQIVENVTFTSMLLSEFTLAGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGT 474
T + DV V + F M L E L G+ + G++ PS +Q + G D++ +A+SGT
Sbjct: 12 TTSEDVNAVSS--FEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIAQAQSGT 69
Query: 475 GKTVVFSIIALEKLNLN-NGLQVMILTPTREIAAQICDVIKQIGSHHKGLNVEVVMGGLS 651
GKT FSI L+ ++L+ Q +IL+PTRE+A QI +V+ +G H + +GG S
Sbjct: 70 GKTATFSIGILQSIDLSVRDTQALILSPTRELAVQIQNVVLALGD-HMNVQCHACIGGTS 128
Query: 652 VNEDIAKFKKKVHIVVGSPGRLKTSYCRKS 741
V DI K H+V G+PGR+ R++
Sbjct: 129 VGNDIKKLDYGQHVVSGTPGRVTDMIRRRN 158
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 90.6 bits (215), Expect = 3e-19
Identities = 55/140 (39%), Positives = 81/140 (57%), Gaps = 3/140 (2%)
Frame = +1
Query: 331 TFTSMLLSEFTLAGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIALE 510
TF M L L G+ + GF++PS IQ + D+L +A+SGTGKT FSI L+
Sbjct: 20 TFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSISVLQ 79
Query: 511 KLNLN-NGLQVMILTPTREIAAQICDVIKQIGSHHKGLNVE--VVMGGLSVNEDIAKFKK 681
K++ + Q +IL PTRE+A QI V+ +G +NVE +GG V +D+A +
Sbjct: 80 KIDTSLKQCQALILAPTRELAQQIQKVVVALGDL---MNVECHACIGGTLVRDDMAALQA 136
Query: 682 KVHIVVGSPGRLKTSYCRKS 741
VH+VVG+PGR+ R++
Sbjct: 137 GVHVVVGTPGRVHDMIQRRA 156
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 85.4 bits (202), Expect = 1e-17
Identities = 48/137 (35%), Positives = 75/137 (54%), Gaps = 4/137 (2%)
Frame = +1
Query: 319 VENVTFTSMLLSEFTLAGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSI 498
+ + F LL L + SGF+ PS +Q +P G D+L +AKSG GKT VF +
Sbjct: 48 IHSTGFRDFLLKPELLRAITDSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVL 107
Query: 499 IALEKLNLNNG-LQVMILTPTREIAAQICDVIKQIGSHHKGLNVEVVMGGLSVNEDIAKF 675
L+++ +G + V++L TRE+A QI + + + + V GG+++ +D+ F
Sbjct: 108 STLQQIEPVDGEVSVLVLCHTRELAFQIKNEYARFSKYLPDVRTAVFYGGINIKQDMEAF 167
Query: 676 K---KKVHIVVGSPGRL 717
K K HIVV +PGRL
Sbjct: 168 KDKSKSPHIVVATPGRL 184
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 82.6 bits (195), Expect = 7e-17
Identities = 48/126 (38%), Positives = 68/126 (53%), Gaps = 3/126 (2%)
Frame = +1
Query: 349 LSEFTLAGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIALEKLNLN- 525
LS L L +GF KP PIQ +P GFD++ +A +G+GKT+ F I LE N
Sbjct: 129 LSPEMLGSLSKAGFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPILEHCLRNV 188
Query: 526 --NGLQVMILTPTREIAAQICDVIKQIGSHHKGLNVEVVMGGLSVNEDIAKFKKKVHIVV 699
+Q +++ PTRE+A QIC + I + V + GGL+V + K H+VV
Sbjct: 189 DAKYVQALVVAPTRELAHQICQHFELI-KPSPNIRVMSITGGLAVQKQQRLLNKHPHVVV 247
Query: 700 GSPGRL 717
+PGRL
Sbjct: 248 ATPGRL 253
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 79.0 bits (186), Expect = 8e-16
Identities = 47/130 (36%), Positives = 71/130 (54%), Gaps = 3/130 (2%)
Frame = +1
Query: 334 FTSMLLSEFTLAGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIALEK 513
F SM L++ L + GF+ P+PIQ +PL G D++ A++G+GKT F I +E
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIEH 130
Query: 514 LN---LNNGLQVMILTPTREIAAQICDVIKQIGSHHKGLNVEVVMGGLSVNEDIAKFKKK 684
L N+ + +IL+P RE+A Q V+K S L ++GG+S+ E + K
Sbjct: 131 LKSTLANSNTRALILSPNRELALQTVKVVKDF-SKGTDLRSVAIVGGVSLEEQFSLLSGK 189
Query: 685 VHIVVGSPGR 714
IVV +PGR
Sbjct: 190 PDIVVATPGR 199
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 77.0 bits (181), Expect = 3e-15
Identities = 50/148 (33%), Positives = 80/148 (54%), Gaps = 5/148 (3%)
Frame = +1
Query: 289 NSTRTRDVQIVENVTFTSMLLSEFTLAGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKS 468
N++ T D++ F+ + LSE + GF+ + IQ +P G D+L AK+
Sbjct: 81 NASSTSDIE-----KFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAAKT 135
Query: 469 GTGKTVVFSIIALE-----KLNLNNGLQVMILTPTREIAAQICDVIKQIGSHHKGLNVEV 633
G+GKT+ F I +E K NG V+I++PTRE+A QI V K++ +H +
Sbjct: 136 GSGKTLAFLIPTIEMLYALKFKPRNGTGVIIISPTRELALQIFGVAKELLKYHH-QTFGI 194
Query: 634 VMGGLSVNEDIAKFKKKVHIVVGSPGRL 717
V+GG + + K K V+++V +PGRL
Sbjct: 195 VIGGANRRAEADKLVKGVNLLVATPGRL 222
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 74.9 bits (176), Expect = 1e-14
Identities = 44/143 (30%), Positives = 86/143 (60%), Gaps = 13/143 (9%)
Frame = +1
Query: 328 VTFTSMLLSEFTLAGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIAL 507
++F S+ + ++ + + GF+K +P+Q + +PL DL++EA +G+GKT+ + +
Sbjct: 1 MSFQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCF 60
Query: 508 EKLNLNN----GLQVMILTPTREIAAQICDVIKQIGSHH-------KGLNVEVVMGGL-S 651
+K+ + GL +I+ PTRE+A QI +V K++ ++ K L ++ +GG +
Sbjct: 61 DKVTRRDTDETGLGALIVAPTRELATQIFNVTKELLAYQPDSLDGGKKLVADMYIGGKGT 120
Query: 652 VNEDIAKFKKK-VHIVVGSPGRL 717
+ D+A F++K +V+G+PGRL
Sbjct: 121 LTNDLASFREKNPSVVIGTPGRL 143
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 74.1 bits (174), Expect = 2e-14
Identities = 49/143 (34%), Positives = 77/143 (53%), Gaps = 4/143 (2%)
Frame = +1
Query: 298 RTRDVQIVENVTFTSMLLSEFTLAGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTG 477
+ + + + +F SM LS L GL + GF+ P+ IQ +PL G D++ A +G+G
Sbjct: 249 KEKSMMTTTHSSFQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSG 308
Query: 478 KTVVFSIIALEKLNLN----NGLQVMILTPTREIAAQICDVIKQIGSHHKGLNVEVVMGG 645
KT F + LE+L +V+IL PTRE+A Q V +I S + V + +GG
Sbjct: 309 KTAAFIVPILERLLYRPKKVPTTRVLILCPTRELAMQCHSVATKIAS-FTDIMVCLCIGG 367
Query: 646 LSVNEDIAKFKKKVHIVVGSPGR 714
LS+ + +K+ IV+ +PGR
Sbjct: 368 LSLKLQEQELRKRPDIVIATPGR 390
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 70.5 bits (165), Expect = 3e-13
Identities = 38/112 (33%), Positives = 66/112 (58%), Gaps = 1/112 (0%)
Frame = +1
Query: 385 GFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIALEKL-NLNNGLQVMILTPTR 561
GF+ P+PIQ +P+ D++ A++G+GKT F++ +++L N + ++L PTR
Sbjct: 65 GFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQELWNNPSPFFAVVLAPTR 124
Query: 562 EIAAQICDVIKQIGSHHKGLNVEVVMGGLSVNEDIAKFKKKVHIVVGSPGRL 717
E+A QI + + IG G+ V++GG+ + KK H++V +PGRL
Sbjct: 125 ELAYQISEQFEAIGG-SIGVRSVVIVGGMDMVTQAVALSKKPHVLVCTPGRL 175
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 67.3 bits (157), Expect = 3e-12
Identities = 49/149 (32%), Positives = 75/149 (50%), Gaps = 9/149 (6%)
Frame = +1
Query: 298 RTRDVQIVENVTFTSML-LSEFTLAGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGT 474
+ R + + VT S LS T++ + S G++KP+ IQ +P G D++ AK+G+
Sbjct: 407 KIRGIDCPKPVTSWSQCGLSAQTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGS 466
Query: 475 GKTVVF------SIIALEKLNLNNGLQVMILTPTREIAAQICDVIKQIGSHHKGLNVEV- 633
GKT+ F I L G +I+TPTRE+A QI ++ K LN+
Sbjct: 467 GKTIAFLLPMFRHIKDQRPLKTGEGPIAIIMTPTRELAVQI---FRECKPFLKLLNIRAC 523
Query: 634 -VMGGLSVNEDIAKFKKKVHIVVGSPGRL 717
GG + + IA K+ IVV +PGR+
Sbjct: 524 CAYGGAPIKDQIADLKRGAEIVVCTPGRM 552
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 65.3 bits (152), Expect = 1e-11
Identities = 39/130 (30%), Positives = 74/130 (56%), Gaps = 1/130 (0%)
Frame = +1
Query: 331 TFTSMLLSEFTLAGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIALE 510
+F+ + +S + + L + +P+ IQ + G + + AK+G+GKT F++ +E
Sbjct: 8 SFSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPIIE 67
Query: 511 KLNLN-NGLQVMILTPTREIAAQICDVIKQIGSHHKGLNVEVVMGGLSVNEDIAKFKKKV 687
K + + +G+ +ILTPTRE+A QI + +G+ + L +++GG+ + K+
Sbjct: 68 KWSKDPSGIFALILTPTRELAIQIDEQFAALGA-NLNLKHALIVGGMDMIRQSIDLSKRP 126
Query: 688 HIVVGSPGRL 717
H+VV +PGRL
Sbjct: 127 HVVVATPGRL 136
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 62.9 bits (146), Expect = 6e-11
Identities = 40/133 (30%), Positives = 75/133 (56%), Gaps = 5/133 (3%)
Frame = +1
Query: 334 FTSMLLSEFTLAGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIALEK 513
F + L++ T + L ++ F + IQ +P G D+L AK+G+GKT+ F + +E
Sbjct: 41 FAELPLTQPTKSALKNAHFITLTEIQKQCIPSALKGRDILGAAKTGSGKTLAFIVPLIEN 100
Query: 514 LNLN-----NGLQVMILTPTREIAAQICDVIKQIGSHHKGLNVEVVMGGLSVNEDIAKFK 678
L +GL ++++PTRE+A Q + + +IG H + +++GG + E+ +
Sbjct: 101 LYRKKWTSLDGLGALVISPTRELAIQTFETLVKIGRLH-SFSAGLIIGGNNYKEEKERL- 158
Query: 679 KKVHIVVGSPGRL 717
+++I+V +PGRL
Sbjct: 159 SRMNILVCTPGRL 171
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 62.9 bits (146), Expect = 6e-11
Identities = 40/114 (35%), Positives = 67/114 (58%), Gaps = 4/114 (3%)
Frame = +1
Query: 388 FQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIALEKLN-LNNGL---QVMILTP 555
+++P+PIQ P G D++ A++G+GKTV F I AL+ LN L++ +V++++P
Sbjct: 185 YKEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIPALQYLNGLSDNKSVPRVLVVSP 244
Query: 556 TREIAAQICDVIKQIGSHHKGLNVEVVMGGLSVNEDIAKFKKKVHIVVGSPGRL 717
TRE+A Q + + + L VV GG +E A+ K +++G+PGRL
Sbjct: 245 TRELAIQTYENLNSL-IQGTNLKAVVVYGGAPKSEQ-ARAAKNASVIIGTPGRL 296
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 62.5 bits (145), Expect = 8e-11
Identities = 43/131 (32%), Positives = 71/131 (54%), Gaps = 4/131 (3%)
Frame = +1
Query: 331 TFTSMLLSEFTLAGLISSGFQKPSPIQLHGVPL--GKCGFDLLLEAKSGTGKTVVFSIIA 504
+F + L L G+ S FQKPS IQ +PL +++ +++SGTGKT F++
Sbjct: 115 SFEELELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTM 174
Query: 505 LEKLNLNNGL-QVMILTPTREIAAQICDVIKQIGSHHKGLNVEVVMGGLSVNEDIAKFKK 681
L +++ + Q + L P+RE+A QI DV+ ++G K V+ G + + + K K
Sbjct: 175 LSRVDASVPKPQAICLAPSRELARQIMDVVTEMG---KYTEVKTAFG---IKDSVPKGAK 228
Query: 682 -KVHIVVGSPG 711
IV+G+PG
Sbjct: 229 IDAQIVIGTPG 239
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 61.7 bits (143), Expect = 1e-10
Identities = 40/135 (29%), Positives = 65/135 (48%), Gaps = 6/135 (4%)
Frame = +1
Query: 331 TFTSMLLSEFTLAGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIALE 510
TF + L + GF+ P+PIQ P+ G D++ + +G+GKT+ + + A+
Sbjct: 123 TFEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIV 182
Query: 511 KLNL------NNGLQVMILTPTREIAAQICDVIKQIGSHHKGLNVEVVMGGLSVNEDIAK 672
+N +G V++L PTRE+A QI + G + N V GG+ I
Sbjct: 183 HINAQPLLSPGDGPIVLVLAPTRELAVQIQQECTKFGKSSRIRNT-CVYGGVPRGPQIRD 241
Query: 673 FKKKVHIVVGSPGRL 717
+ V I + +PGRL
Sbjct: 242 LIRGVEICIATPGRL 256
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 57.2 bits (132), Expect = 3e-09
Identities = 38/124 (30%), Positives = 75/124 (60%), Gaps = 8/124 (6%)
Frame = +1
Query: 373 LISSGFQKPSPIQLHGV-PLGKCGFDLLLEAKSGTGKTVVFSIIALE-----KLNLNNG- 531
L +GF+K +P+Q + + + +++AK+GTGKT+ F ++A + K LN+
Sbjct: 53 LSRAGFEKMTPVQQRVLNEVFPNEENAVVQAKTGTGKTLAFLLVAFKDVLKGKPRLNSSK 112
Query: 532 LQVMILTPTREIAAQICDVIKQIGSHHKGLNVEVVMGGLS-VNEDIAKFKKKVHIVVGSP 708
+ +IL+PTRE+A QI + +++ ++ G+ V +GG S + E+ A + ++++ +P
Sbjct: 113 IHSVILSPTRELALQIFEEARKL-TYGTGIRVSYAIGGNSKMREENAIRRGNANLLIATP 171
Query: 709 GRLK 720
GRL+
Sbjct: 172 GRLE 175
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 57.2 bits (132), Expect = 3e-09
Identities = 42/119 (35%), Positives = 63/119 (52%), Gaps = 9/119 (7%)
Frame = +1
Query: 388 FQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVF---SIIALEKL------NLNNGLQV 540
+++PS IQ +P+ DL+ A++G+GKT F IIA+ KL N++ G
Sbjct: 269 YKEPSSIQRAAIPVLLQRKDLIGIAETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYA 328
Query: 541 MILTPTREIAAQICDVIKQIGSHHKGLNVEVVMGGLSVNEDIAKFKKKVHIVVGSPGRL 717
++L PTRE+A QI V + G V+GG + E + + HIVV +PGRL
Sbjct: 329 VVLAPTRELAQQI-QVEGNKFAEPLGFRCVSVVGGHAFEEQSFQMSQGAHIVVATPGRL 386
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 53.6 bits (123), Expect = 4e-08
Identities = 32/102 (31%), Positives = 63/102 (61%), Gaps = 11/102 (10%)
Frame = +1
Query: 445 DLLLEAKSGTGKTVVFSIIALEKL-----NLN---NGLQVMILTPTREIAAQICDVIKQI 600
D +EA++G+GKT+ + + +++L NL+ +G+ +I+ PTRE+ QI +V ++
Sbjct: 180 DAFIEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSGIYAVIMAPTRELCQQIYNVANKL 239
Query: 601 GSH---HKGLNVEVVMGGLSVNEDIAKFKKKVHIVVGSPGRL 717
++ H ++ V+ GG + A+ +K V+I++G+PGRL
Sbjct: 240 NNNPLSHWIVSCNVI-GGEKKKSEKARIRKGVNILIGTPGRL 280
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 52.8 bits (121), Expect = 6e-08
Identities = 30/97 (30%), Positives = 52/97 (53%), Gaps = 7/97 (7%)
Frame = +1
Query: 331 TFTSMLLSEFTLAGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIALE 510
TF+ L + F+KP+ +Q +PL G DL+ +A++G+GKT + I LE
Sbjct: 15 TFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKTAAYLIPILE 74
Query: 511 KL-------NLNNGLQVMILTPTREIAAQICDVIKQI 600
L G+ ++L PTRE+A Q+ +V++++
Sbjct: 75 LLLKQKQIDENQRGIFALLLVPTRELAQQVYNVLEKL 111
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 51.2 bits (117), Expect = 2e-07
Identities = 31/106 (29%), Positives = 54/106 (50%), Gaps = 2/106 (1%)
Frame = +1
Query: 406 IQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIALEKLNLN--NGLQVMILTPTREIAAQI 579
IQ + +P DLL A +G+GKT+ + L+KL L+ G + +I+ PTRE+ QI
Sbjct: 72 IQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPILQKLQLHVPGGYRAIIVAPTRELCEQI 131
Query: 580 CDVIKQIGSHHKGLNVEVVMGGLSVNEDIAKFKKKVHIVVGSPGRL 717
+++ +E+ + E K ++K + +G+P RL
Sbjct: 132 YRQAEKLSFGTSLKIIELSKSNEKIQEKAPKLREKYDMCIGTPMRL 177
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 50.0 bits (114), Expect = 4e-07
Identities = 39/147 (26%), Positives = 72/147 (48%), Gaps = 19/147 (12%)
Frame = +1
Query: 334 FTSMLLSEFTLAGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTV--VFSIIAL 507
FTS L+ L + SG+ +P+P+Q + +P+ G DL+ A++G+GKT +F I++L
Sbjct: 171 FTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFPILSL 230
Query: 508 E--------KLNLNNGL---------QVMILTPTREIAAQICDVIKQIGSHHKGLNVEVV 636
++ + G+ +IL PTRE+ QI + ++ + + V
Sbjct: 231 AFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTRELVCQIHEESRKF-CYRSWVRPCAV 289
Query: 637 MGGLSVNEDIAKFKKKVHIVVGSPGRL 717
GG + I + + ++ +PGRL
Sbjct: 290 YGGADIRAQIRQIDQGCDLLSATPGRL 316
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 38.3 bits (85), Expect = 0.001
Identities = 29/108 (26%), Positives = 55/108 (50%), Gaps = 7/108 (6%)
Frame = +1
Query: 415 HGVPLGKCGFDLLLEAKSGTGKTVVFSIIALEKLNLNN--GLQVMILTPTREIAAQICDV 588
HG P+ G D+ + A +G+GKT+ + I ++ L+ L+ +++ PTRE+ Q+
Sbjct: 166 HG-PMYSYGGDVCVSAATGSGKTLSYVIPIVQCLSHRTVPRLRCVVIVPTRELTVQVAKT 224
Query: 589 IKQIGSHHKGLNVEVVMGGLSVNEDIAKF-----KKKVHIVVGSPGRL 717
+ S GL V G S+ + + + ++ ++V +PGRL
Sbjct: 225 FEYYMS-GAGLQVCAWTGQKSLRHETYQLNGDENECRIDVLVSTPGRL 271
>SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 435
Score = 29.1 bits (62), Expect = 0.88
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +3
Query: 390 PKTISNSTSWCPTRQMWFRFVTRSKVWNWKNCCVFYNSIRKTKS 521
P T +SW P +Q + K+WN + CV +++I +S
Sbjct: 87 PPTFFLKSSWLPLKQKRVLTSSLIKLWNEIHDCVLFDAIEHVRS 130
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 28.7 bits (61), Expect = 1.2
Identities = 11/44 (25%), Positives = 25/44 (56%)
Frame = +1
Query: 439 GFDLLLEAKSGTGKTVVFSIIALEKLNLNNGLQVMILTPTREIA 570
GF +++ + +GK++++ I L+ L +N + PT+ +A
Sbjct: 326 GFHVIVSTSTSSGKSLIYQIPILQSLLEDNQSTAFFVFPTKSLA 369
>SPAC15E1.05c |||ethanolamine-phosphate cytidylyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 365
Score = 27.5 bits (58), Expect = 2.7
Identities = 17/50 (34%), Positives = 29/50 (58%)
Frame = +1
Query: 451 LLEAKSGTGKTVVFSIIALEKLNLNNGLQVMILTPTREIAAQICDVIKQI 600
+L+AK G+T+V I + E++ LN G VM L R ++A C + ++
Sbjct: 28 ILQAKQ-LGETLVIGIHSDEEITLNKGPPVMTL-EERCLSANTCKWVDEV 75
>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 711
Score = 27.1 bits (57), Expect = 3.6
Identities = 14/57 (24%), Positives = 29/57 (50%)
Frame = +1
Query: 40 DLIKSFKKNRLFPKARTLNVFKEYLYNCFDHIQPFHLN*IENYFKKKAKELLGTIQY 210
D I KN + PK L K++++NC + ++ + ++N+ ++ K L + Y
Sbjct: 644 DQILQVPKN-ILPKTTNLEDSKDFIFNCVNSLRSQRMKMVQNF--EQFKFLYDVVDY 697
>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 27.1 bits (57), Expect = 3.6
Identities = 17/80 (21%), Positives = 35/80 (43%)
Frame = +1
Query: 445 DLLLEAKSGTGKTVVFSIIALEKLNLNNGLQVMILTPTREIAAQICDVIKQIGSHHKGLN 624
+LLL +G GKT + +++ L +++ L PT+ + Q + G
Sbjct: 126 NLLLALPTGLGKTFIAAVVMLNYFRWFPESKIIFLAPTKPLLLQQRVACSNVAGMSPGAT 185
Query: 625 VEVVMGGLSVNEDIAKFKKK 684
E + G +S + + ++ K
Sbjct: 186 AE-LNGEVSPDRRLFEYNTK 204
>SPCC188.12 |spn6|SPCC584.09|septin Spn6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 380
Score = 26.6 bits (56), Expect = 4.7
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 433 KCGFDLLLEAKSGTGKTVVFSII 501
+CG ++L SGTGKT F+ +
Sbjct: 28 ECGLTIMLCGASGTGKTTFFNTL 50
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 26.6 bits (56), Expect = 4.7
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = +1
Query: 448 LLLEAKSGTGKTVVFSIIALEKLNLNNGLQVMILTP 555
++L K+G+GK+ +F I+ LN+ V +++P
Sbjct: 2170 IILLGKTGSGKSQIFRILQSALLNIGIDCIVYVISP 2205
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 26.2 bits (55), Expect = 6.2
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +3
Query: 210 FQNRIDHFLKTAGYLNCRYVFSS 278
F + +DHFL G LN VFSS
Sbjct: 831 FTHSVDHFLLRVGSLNNPIVFSS 853
>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 990
Score = 26.2 bits (55), Expect = 6.2
Identities = 15/62 (24%), Positives = 30/62 (48%)
Frame = -1
Query: 671 LAMSSFTDNPPITTSTFRPLWCDPICLITSHICAAISRVGVKIITCKPLLRFSFSNAIIE 492
+A+SS+ ++ + P + + C+ + C A+ V K + C L ++SN I +
Sbjct: 234 IAISSYLAKASVSVQSVLPAFTE--CMDLTVNCIALDEVSEKAMNCLADLLANYSNFITQ 291
Query: 491 NT 486
T
Sbjct: 292 PT 293
>SPCC736.14 |dis1||microtubule-associated protein Dis1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 882
Score = 25.8 bits (54), Expect = 8.2
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -1
Query: 491 NTTVFPVPDFASSNKSKPHLPS 426
NT +P F+S+ K KPHL S
Sbjct: 240 NTQEVVLPSFSSNAKPKPHLSS 261
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,324,672
Number of Sequences: 5004
Number of extensions: 68280
Number of successful extensions: 245
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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